Factsheet for Bra000902.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90962	Canola	mitochondrion	98.8	98.8
CDX91822	Canola	mitochondrion	94.01	94.2
AT4G01990.1	Thale cress	mitochondrion	74.45	74.3
Bra033321.1-P	Field mustard	mitochondrion	61.48	59.81
VIT_07s0005g01630.t01	Wine grape	mitochondrion	42.71	45.34
PGSC0003DMT400023279	Potato	mitochondrion	44.31	44.85
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	41.92	43.3
KRH69203	Soybean	cytosol	33.13	42.67
KRH31780	Soybean	mitochondrion	40.32	42.44
GSMUA_Achr11P...	Banana	mitochondrion	38.72	37.38
Os01t0301000-01	Rice	mitochondrion	37.13	35.63
Bra031484.1-P	Field mustard	mitochondrion	34.73	35.37
Zm00001d009122_P001	Maize	mitochondrion	36.33	35.34
Bra027131.1-P	Field mustard	mitochondrion	34.53	35.23
TraesCS6B01G118900.1	Wheat	cytosol	28.74	34.62
EES02848	Sorghum	mitochondrion	36.13	34.15
TraesCS2A01G552700.1	Wheat	mitochondrion	37.52	34.12
TraesCS2B01G584000.2	Wheat	mitochondrion	37.52	34.0
TraesCS6D01G079300.1	Wheat	mitochondrion	34.33	33.79
TraesCS2D01G553300.1	Wheat	mitochondrion	37.72	33.75
TraesCS6A01G091100.1	Wheat	mitochondrion	33.93	33.53
TraesCS6B01G119100.1	Wheat	mitochondrion	32.93	33.33
TraesCS6A01G091000.1	Wheat	mitochondrion	33.93	33.33
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	33.13	33.13
TraesCS2B01G583500.1	Wheat	mitochondrion	31.74	33.12
TraesCS6D01G079100.1	Wheat	mitochondrion	31.14	32.57
TraesCS6B01G119000.1	Wheat	mitochondrion	30.94	32.36
TraesCS6D01G079200.1	Wheat	plastid	34.73	32.16
Os01t0301700-01	Rice	mitochondrion	32.34	32.14
TraesCS6A01G090800.2	Wheat	mitochondrion	30.74	31.95
TraesCS6A01G090900.1	Wheat	mitochondrion	30.54	31.94
TraesCS6A01G091200.2	Wheat	cytosol	22.55	30.96
Os01t0301500-01	Rice	cytosol, mitochondrion	29.54	30.58
TraesCS2A01G552100.1	Wheat	mitochondrion	33.33	30.36
HORVU6Hr1G016390.10	Barley	plastid	33.53	30.22
HORVU6Hr1G016360.7	Barley	mitochondrion	30.14	30.2
TraesCS2D01G553100.1	Wheat	mitochondrion	32.53	29.91
Bra038762.1-P	Field mustard	mitochondrion	27.54	28.28
TraesCS6D01G079400.1	Wheat	plastid	25.35	28.16
Bra033215.1-P	Field mustard	mitochondrion	28.74	28.12
Bra020588.1-P	Field mustard	mitochondrion	26.15	26.68
Bra018528.1-P	Field mustard	mitochondrion	25.95	25.29
Bra036629.1-P	Field mustard	mitochondrion	23.95	25.16
Bra036673.1-P	Field mustard	mitochondrion	22.75	23.85
Bra011054.1-P	Field mustard	mitochondrion	15.97	23.46
Bra028632.1-P	Field mustard	mitochondrion	18.36	22.77
Bra036496.1-P	Field mustard	plastid	19.56	20.21
Bra031586.1-P	Field mustard	mitochondrion	21.16	19.96
Bra027226.1-P	Field mustard	plastid	21.16	17.61
Bra032863.1-P	Field mustard	mitochondrion	13.37	16.75
Bra032865.1-P	Field mustard	cytosol	19.16	16.72
Bra003559.1-P	Field mustard	cytosol	23.55	16.57
Bra032862.1-P	Field mustard	mitochondrion	11.98	15.83
Bra001400.1-P	Field mustard	mitochondrion, plastid	22.75	15.22
Bra032866.1-P	Field mustard	mitochondrion	15.77	12.38
Bra026128.1-P	Field mustard	cytosol	22.95	12.35

Protein Annotations

EnsemblPlants:Bra000902.1	EnsemblPlants:Bra000902.1-P	EnsemblPlantsGene:Bra000902	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0002540670	UniProt:M4C9M3	MapMan:35.1	:	:

Description

AT4G01990 (E=3e-200) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:+:13811961..13814232

Molecular Weight (calculated)

56528.0 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.335

Length

501 amino acids

Sequence
(BLAST)

001: MMAMYSASRL ARRFCTTLAA APAAIVGETA AASSTRKTAK KQRSVYKKLS NLGSKGGKME ETLNKFAMEG IPIVKHDFVR YAKDLRKNRL PQRALEVFEW
101: MEKKEIAFTG SDHAIRLDLI AKTKGLEAAE TYFNTLDPSS KNRSSYGALL NCYCVERDED KAKSHFNEMV DLNLVTNSLP FNNLMAMYLR LGQYDKVPAL
201: VLAMKEKNIP PCAITYSMWI QSCGSLNDLD GVEKVVEEMK DDSSWDTFAN LASIYAKAGL FSKAEAALKS LEEKMNPHKR DSYHFLISLY AGISNPSEVY
301: RVWELLKKGH PKVNNSSSLA MVQALSRLND FDGIKKVFKE WESTCYTYDM RVANVMISSY LKENMYEEAE AVFDGAVKKC KGQLSKARQL LMVYLLKNDQ
401: AGLALKHLEA AVLDQDKNWS WSSELVSLFF LHFEKSKDVD GAEELCKTLV KWSPLGSESY TPLLKTYVAA ERTCNGMQKR LEEEGIEIDD EMEGLLSKIC
501: T

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.