Factsheet for HORVU2Hr1G120330.4

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G552700.1	Wheat	mitochondrion	82.24	74.77
TraesCS2B01G584000.2	Wheat	mitochondrion	81.24	73.6
TraesCS2D01G553300.1	Wheat	mitochondrion	81.44	72.86
Os01t0301000-01	Rice	mitochondrion	67.66	64.94
Zm00001d009122_P001	Maize	mitochondrion	65.87	64.08
EES02848	Sorghum	mitochondrion	65.87	62.26
GSMUA_Achr11P...	Banana	mitochondrion	48.1	46.44
Os01t0301500-01	Rice	cytosol, mitochondrion	44.71	46.28
VIT_07s0005g01630.t01	Wine grape	mitochondrion	35.33	37.5
KRH69203	Soybean	cytosol	28.14	36.25
PGSC0003DMT400023279	Potato	mitochondrion	35.33	35.76
CDY15237	Canola	mitochondrion	35.53	34.7
Bra033321.1-P	Field mustard	mitochondrion	35.33	34.37
CDX89976	Canola	mitochondrion	35.13	34.17
AT4G01990.1	Thale cress	mitochondrion	33.73	33.67
CDX91822	Canola	mitochondrion	33.33	33.4
CDX90962	Canola	mitochondrion	33.33	33.33
Bra000902.1-P	Field mustard	mitochondrion	33.13	33.13
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	32.93	33.13
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	31.94	32.99
KRH31780	Soybean	mitochondrion	30.94	32.56
AT1G02370.1	Thale cress	mitochondrion	34.73	32.4
HORVU6Hr1G016390.10	Barley	plastid	33.33	30.04
Solyc01g100580.2.1	Tomato	mitochondrion	28.74	29.88
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	32.73	29.76
HORVU6Hr1G016360.7	Barley	mitochondrion	29.54	29.6
PGSC0003DMT400007271	Potato	mitochondrion	28.14	29.19
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	25.55	24.66
HORVU5Hr1G027150.1	Barley	mitochondrion	25.15	24.51
HORVU2Hr1G093220.7	Barley	mitochondrion	25.35	24.24
HORVU2Hr1G079080.2	Barley	cytosol	12.97	23.64
HORVU6Hr1G085430.2	Barley	mitochondrion	22.95	21.74
HORVU3Hr1G070650.1	Barley	cytosol	6.19	21.38
HORVU1Hr1G085940.2	Barley	cytosol	6.99	20.59
HORVU3Hr1G040710.1	Barley	mitochondrion	21.36	17.48
HORVU7Hr1G066420.6	Barley	plastid	15.77	15.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287JNV7	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU2Hr1G120330	EnsemblPlants:HORVU2Hr1G120330.4
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000B47667C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:748259748..748261701

Molecular Weight (calculated)

57498.2 Da

IEP (calculated)

8.001

GRAVY (calculated)

-0.148

Length

501 amino acids

Sequence
(BLAST)

001: RRFDMLHVPY FQYLFRFFVF EATMFPIFVI LFLSQLCAQL SLGGQKNITS DMAGVLQLIL FCLLLVLLLL VFNYVCCTHA RICLFLWQLM DWMVHTKGMN
101: MSYTNHAIRL DLIYKVRGLE AAEKYFEGLP DPAKNHRTFG ALLNCYCSSK EEEKATDLYR KMDELGISSS TLPINNLMSL YMKLGQHKKV CSLFEEMKEK
201: NVKPDNLTCC ILMTSLAALN KIDDVEQVLK EMEEKDGVLG WSAYSTLASI YQSAGLVEKA ESALKKLEGL VQDRDGRQPF DFLMSLYASV GNLSEVKRVW
301: GVVKATFPKV TNTSYFSMLQ ALLKLNDADY MKQVFEEWES NHEFYDAKLT NVMTRAHLKN GMAKEAELLW EKAKEKGACF DSKTCELFLD HYMVAGDMKS
401: ALNWVENVTK LPKKTAKLDQ DKIPKFSKYF EEQKDVQGAE RFCRCLRALG CIDGKAYESL LRTYLAAGET SRSLRQQIKD DKIEICYDIG KLLKRLGDKG
501: R

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.