Factsheet for Solyc01g079320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023279	Potato	mitochondrion	94.85	92.93
VIT_07s0005g01630.t01	Wine grape	mitochondrion	51.34	52.75
KRH31780	Soybean	mitochondrion	44.74	45.59
KRH69203	Soybean	cytosol	35.05	43.7
CDY15237	Canola	mitochondrion	45.57	43.08
AT4G01990.1	Thale cress	mitochondrion	44.12	42.63
CDX89976	Canola	mitochondrion	45.15	42.52
Bra033321.1-P	Field mustard	mitochondrion	45.15	42.52
CDX91822	Canola	mitochondrion	43.51	42.2
CDX90962	Canola	mitochondrion	43.3	41.92
Bra000902.1-P	Field mustard	mitochondrion	43.3	41.92
AT1G02370.1	Thale cress	mitochondrion	44.74	40.41
GSMUA_Achr11P...	Banana	mitochondrion	41.65	38.92
Os01t0301000-01	Rice	mitochondrion	40.21	37.36
Solyc11g006380.1.1	Tomato	cytosol	37.73	37.2
EES02848	Sorghum	mitochondrion	39.59	36.23
Zm00001d009122_P001	Maize	mitochondrion	37.53	35.34
Solyc01g100580.2.1	Tomato	mitochondrion	34.64	34.85
TraesCS2B01G584000.2	Wheat	mitochondrion	39.18	34.36
TraesCS6A01G091200.2	Wheat	cytosol	25.77	34.25
TraesCS2A01G552700.1	Wheat	mitochondrion	38.76	34.12
TraesCS2D01G553300.1	Wheat	mitochondrion	39.38	34.11
TraesCS6A01G091100.1	Wheat	mitochondrion	34.85	33.33
TraesCS6B01G118900.1	Wheat	cytosol	28.45	33.17
TraesCS6D01G079300.1	Wheat	mitochondrion	34.64	33.01
TraesCS2B01G583500.1	Wheat	mitochondrion	31.96	32.29
TraesCS6A01G091000.1	Wheat	mitochondrion	33.81	32.16
Os01t0301700-01	Rice	mitochondrion	33.2	31.94
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	32.99	31.94
TraesCS6D01G079100.1	Wheat	mitochondrion	31.34	31.73
TraesCS6B01G119100.1	Wheat	mitochondrion	32.37	31.72
TraesCS6A01G090800.2	Wheat	mitochondrion	31.34	31.54
Os01t0301500-01	Rice	cytosol, mitochondrion	31.13	31.2
TraesCS6D01G079200.1	Wheat	plastid	34.43	30.87
TraesCS6B01G119000.1	Wheat	mitochondrion	30.1	30.48
TraesCS6A01G090900.1	Wheat	mitochondrion	29.9	30.27
TraesCS6D01G079400.1	Wheat	plastid	27.84	29.93
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	29.9	29.53
HORVU6Hr1G016390.10	Barley	plastid	33.81	29.5
HORVU6Hr1G016360.7	Barley	mitochondrion	30.31	29.4
TraesCS2A01G552100.1	Wheat	mitochondrion	32.99	29.09
TraesCS2D01G553100.1	Wheat	mitochondrion	32.16	28.62
Solyc06g005140.2.1	Tomato	mitochondrion	30.31	28.27
Solyc01g089870.2.1	Tomato	nucleus	29.48	26.24
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	24.54	26.21
Solyc07g063220.2.1	Tomato	plastid	29.9	26.13
Solyc01g081320.2.1	Tomato	plastid	27.01	25.29
Solyc10g047370.1.1	Tomato	mitochondrion	20.62	25.06
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	24.54	24.14
Solyc07g054100.1.1	Tomato	cytosol	15.26	22.91
Solyc06g071900.2.1	Tomato	mitochondrion	21.03	19.07
Solyc12g020050.1.1	Tomato	plastid	22.06	17.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4AXH7
PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc01g079320.2	EnsemblPlants:Solyc01g079320.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002761B44	SEG:seg

Description

No Description!

Coordinates

chr1:-:78393355..78395694

Molecular Weight (calculated)

56794.1 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.558

Length

485 amino acids

Sequence
(BLAST)

001: MRAGGYTWES YRAKMIRNLT RQISNETRLN LRRLCFTAAE QSGRDSRLYR RLSALGATKG SVTETINAYT REGRVVKKYE LEKCIKELRK YKRYQHALEI
101: MEWMEKRGIN FSYGDYGVRL DLIAKVQGIT AAEKYFGSLS PSMQNQSTYG ALLNCYCVEK MTDKALTFFE RMDQLKFTNR SLAFNNLMSL YMRLGQPEKV
201: APLVQEMKSR KVPLCTFSYN VWMNSYSCLD DIEGVERVFE ELKQENAKEC DWTTYSNLAV AYVKAGHNEK AELALKKLEE EMGPRNRQAY HYLISLHARI
301: SNLGESLSKH NDMDGLKKYY EEWESSCSTY DMRLANNVIG AYLRHDMLNN AEKVFHCALK RSQGPFFLAW EMFMLFYLRK RQINFAQQCM EAIASRIKEN
401: KWRPKYETIS NFLEYFVEEK DVDGAEEFYK FLKKVNCLSS DVYNSLLRTY AAANRTTDDM KLRIKEDGIE MSCELEELLE SVCPE

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.