Factsheet for Solyc07g063220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032340	Potato	mitochondrion	84.5	96.9
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	50.63	55.75
KRH55328	Soybean	plastid	43.78	49.39
GSMUA_Achr1P02980_001	Banana	mitochondrion	44.86	46.98
Os07t0598500-01	Rice	mitochondrion	41.44	45.45
EER91421	Sorghum	mitochondrion	39.64	44.35
Zm00001d013923_P001	Maize	mitochondrion	39.82	44.2
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	38.92	43.99
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	41.08	43.93
TraesCS1D01G166800.1	Wheat	mitochondrion	40.0	43.44
TraesCS1B01G188100.1	Wheat	mitochondrion	39.82	43.25
TraesCS1A01G168800.1	Wheat	mitochondrion	39.82	43.25
EER90330	Sorghum	mitochondrion	38.56	42.63
EER90329	Sorghum	mitochondrion	38.02	41.95
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	26.13	31.94
Solyc07g054100.1.1	Tomato	cytosol	18.02	30.96
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	27.39	30.83
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	26.13	29.9
Solyc01g089870.2.1	Tomato	nucleus	28.29	28.81
Solyc01g081320.2.1	Tomato	plastid	26.67	28.57
Solyc06g005140.2.1	Tomato	mitochondrion	25.77	27.5
Solyc11g006380.1.1	Tomato	cytosol	23.78	26.83
Solyc10g047370.1.1	Tomato	mitochondrion	18.92	26.32
Solyc01g100580.2.1	Tomato	mitochondrion	21.98	25.31
Solyc06g071900.2.1	Tomato	mitochondrion	17.84	18.5
Solyc12g020050.1.1	Tomato	plastid	19.64	17.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CH05
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc07g063220.2	EnsemblPlants:Solyc07g063220.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276BC3F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:65744729..65748090

Molecular Weight (calculated)

63425.1 Da

IEP (calculated)

7.624

GRAVY (calculated)

-0.323

Length

555 amino acids

Sequence
(BLAST)

001: MLGSLNHCCS SVSSQSTKPI SSSMNFAILR RSISYNLLQR AFPVRAYCAT VYSSNSKRNN LFSRISPVRH ADLIIPVLDE WVDEGRKVTS FELQRIVRDL
101: RSRKRFSQAL QVSEWMSVRG LCPFKSGDCA VHLDLIGVVH GWEAAECYFN NLTDEQKNDK TSGALFNCYI RERLVEKSLT HFQKMKELGY AHCTLVYNNL
201: MCLYRSTGQL EQVSEVLSEM KENGVTPNNF SYRICINCCG ERADFNGMEK LLEEMESQPF ISADWITYSM MANVYIKAKF KEKALIFLKK LEDRLHKDPI
301: GYNHLISHYG NLGNKEEMLR LWGVHKVVCK KQINRDYITM LGSLVKLGEL ETAETVLKEW ESSCHTYDFR VPNILLIGYC QNDLVDKAET MLHDIIKKGQ
401: TPIPNSWAII AAGYLNMNNM EKAFECMKKA IAVRGQNPAW RPKPHLVSSI SKWLGDQQDS REVEAFLSSL KTVVTGNKNV HDATRNTEAS GIEEENENEE
501: ILSYEQSKYV KSSDEQWYTI ATSLHLVLSK REEKTGDFAT LFGSISITQV FTVII

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.