Factsheet for Solyc07g054100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047256	Potato	extracellular	89.78	89.78
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	86.38	56.59
CDY35213	Canola	cytosol	5.26	41.46
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	46.44	30.06
KRH22399	Soybean	cytosol	40.87	27.73
KRH26940	Soybean	cytosol	41.49	27.02
AT2G20710.1	Thale cress	mitochondrion	39.01	25.71
CDY39781	Canola	mitochondrion	36.84	24.9
CDY03299	Canola	mitochondrion	36.22	24.74
Bra036673.1-P	Field mustard	mitochondrion	36.53	24.69
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	32.51	23.13
TraesCS1B01G188200.1	Wheat	mitochondrion	31.89	20.93
TraesCS1D01G166700.1	Wheat	mitochondrion	31.89	20.81
Bra011054.1-P	Field mustard	mitochondrion	21.67	20.53
AT2G20720.1	Thale cress	cytosol	18.89	20.4
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	30.96	20.37
Os10t0501300-01	Rice	mitochondrion	32.2	20.27
Solyc11g006380.1.1	Tomato	cytosol	30.03	19.72
OQU91552	Sorghum	mitochondrion	30.34	19.22
CDY65573	Canola	mitochondrion	21.67	18.92
Solyc01g081320.2.1	Tomato	plastid	29.72	18.53
GSMUA_Achr5P20750_001	Banana	mitochondrion	31.27	18.5
Solyc06g005140.2.1	Tomato	mitochondrion	29.41	18.27
AT1G28020.1	Thale cress	cytosol, plastid	27.86	18.22
Solyc01g089870.2.1	Tomato	nucleus	30.65	18.17
Solyc07g063220.2.1	Tomato	plastid	30.96	18.02
Solyc01g100580.2.1	Tomato	mitochondrion	26.63	17.84
TraesCS1A01G168700.1	Wheat	mitochondrion	31.89	17.64
Zm00001d032543_P001	Maize	mitochondrion	28.17	17.6
Os10t0501000-01	Rice	cytosol	24.46	17.52
Os10t0501200-00	Rice	mitochondrion	32.2	16.61
CDY31943	Canola	plastid	24.46	16.29
CDY05786	Canola	plastid	24.46	16.29
Bra036496.1-P	Field mustard	plastid	24.46	16.29
CDY71968	Canola	plastid	13.93	15.41
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	22.91	15.26
AT3G11380.1	Thale cress	mitochondrion	25.08	14.97
Solyc10g047370.1.1	Tomato	mitochondrion	18.27	14.79
CDY35212	Canola	mitochondrion	11.76	13.52
AT1G28000.1	Thale cress	mitochondrion	15.79	13.14
Solyc06g071900.2.1	Tomato	mitochondrion	21.05	12.71
Bra032862.1-P	Field mustard	mitochondrion	14.55	12.4
Bra032863.1-P	Field mustard	mitochondrion	15.17	12.25
CDY48421	Canola	mitochondrion	15.48	12.11
CDY27647	Canola	mitochondrion	15.17	12.04
Bra032865.1-P	Field mustard	cytosol	21.05	11.85
Bra001400.1-P	Field mustard	mitochondrion, plastid	27.24	11.75
CDY53325	Canola	mitochondrion	25.08	11.6
Solyc12g020050.1.1	Tomato	plastid	21.67	11.22
CDY53324	Canola	mitochondrion, plastid	25.08	11.08
AT3G11350.1	Thale cress	mitochondrion	11.76	10.59
AT1G43010.1	Thale cress	mitochondrion	8.36	10.51
CDY27645	Canola	mitochondrion	8.05	10.04
CDY66759	Canola	cytosol	20.74	8.97
CDX73880	Canola	mitochondrion	13.62	8.78
Bra032866.1-P	Field mustard	mitochondrion	17.03	8.62
CDY00734	Canola	mitochondrion	1.24	2.26

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CFV5
PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc07g054100.1	EnsemblPlants:Solyc07g054100.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C214	:

Description

No Description!

Coordinates

chr7:-:62500151..62501122

Molecular Weight (calculated)

37003.6 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.451

Length

323 amino acids

Sequence
(BLAST)

001: MQKLKELGHA GTLAYNVMTT LYAKLGYLEK LQSLVLEMED NGIFGDLVSY NILLNVYASI PNVSEMEKVL MKLEADPLLI DWSSYAIAAK GYLKAGNREK
101: ANESLTKCEH RLMGKREKLG IDMLITLYTS MGNKDDVHRI WNKYKQKVKR HNSSYHCMIR GLEKLDDLDG AEEIFAEWET NRVHFDIRIP NLLISAYCKK
201: GHMEKAISII EQLEESGKYA NGSTWNRLAL GYCVQNDMDK AVDTMKKAIL ASQPGWKPHF QSLAFCVKYL QSKGDTQGEE ELKDLLRVRG LCSKEFERSL
301: DKYIEIGYRK SEALNETDNE EIC

Best Arabidopsis Sequence Match ( AT2G20710.2 )
(BLAST)

001: MSEHRVHEIS EGDVAIRLDL IAKVGGLGEA EKFFETIPME RRNYHLYGAL LNCYASKKVL HKAEQVFQEM KELGFLKGCL PYNVMLNLYV RTGKYTMVEK
101: LLREMEDETV KPDIFTVNTR LHAYSVVSDV EGMEKFLMRC EADQGLHLDW RTYADTANGY IKAGLTEKAL EMLRKSEQMV NAQKRKHAYE VLMSFYGAAG
201: KKEEVYRLWS LYKELDGFYN TGYISVISAL LKMDDIEEVE KIMEEWEAGH SLFDIRIPHL LITGYCKKGM MEKAEEVVNI LVQKWRVEDT STWERLALGY
301: KMAGKMEKAV EKWKRAIEVS KPGWRPHQVV LMSCVDYLEG QRDMEGLRKI LRLLSERGHI SYDQLLYDMN GAGLSWKIVD AMGKGRYVEE REVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.