Factsheet for Bra036496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31943	Canola	plastid	99.38	99.38
AT2G20720.1	Thale cress	cytosol	36.29	58.86
Bra036673.1-P	Field mustard	mitochondrion	31.96	32.43
Bra011054.1-P	Field mustard	mitochondrion	21.24	30.21
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	26.19	25.45
Bra032862.1-P	Field mustard	mitochondrion	19.79	25.33
Solyc07g054100.1.1	Tomato	cytosol	16.29	24.46
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	24.54	24.14
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	24.54	23.9
PGSC0003DMT400047256	Potato	extracellular	15.88	23.84
Bra032863.1-P	Field mustard	mitochondrion	19.38	23.5
TraesCS1B01G188200.1	Wheat	mitochondrion	23.71	23.37
KRH22399	Soybean	cytosol	22.47	22.9
KRH26940	Soybean	cytosol	23.09	22.58
TraesCS1D01G166700.1	Wheat	mitochondrion	22.89	22.42
Os10t0501300-01	Rice	mitochondrion	22.68	21.44
OQU91552	Sorghum	mitochondrion	22.27	21.18
Bra036629.1-P	Field mustard	mitochondrion	20.41	20.75
Bra038762.1-P	Field mustard	mitochondrion	20.82	20.7
Bra018528.1-P	Field mustard	mitochondrion	21.44	20.23
Zm00001d032543_P001	Maize	mitochondrion	21.44	20.12
Bra028632.1-P	Field mustard	mitochondrion	16.7	20.05
Bra020588.1-P	Field mustard	mitochondrion	20.21	19.96
Bra033321.1-P	Field mustard	mitochondrion	21.03	19.81
GSMUA_Achr5P20750_001	Banana	mitochondrion	22.27	19.78
Os10t0501000-01	Rice	cytosol	18.35	19.73
Bra000902.1-P	Field mustard	mitochondrion	20.21	19.56
Bra033215.1-P	Field mustard	mitochondrion	20.41	19.34
TraesCS1A01G168700.1	Wheat	mitochondrion	22.89	19.01
Bra027131.1-P	Field mustard	mitochondrion	18.14	17.92
Os10t0501200-00	Rice	mitochondrion	22.47	17.41
Bra031484.1-P	Field mustard	mitochondrion	16.7	16.46
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.95	16.15
Bra032865.1-P	Field mustard	cytosol	18.76	15.85
Bra031586.1-P	Field mustard	mitochondrion	15.67	14.31
Bra027226.1-P	Field mustard	plastid	17.53	14.12
Bra003559.1-P	Field mustard	cytosol	18.14	12.36
Bra032866.1-P	Field mustard	mitochondrion	14.64	11.13
Bra026128.1-P	Field mustard	cytosol	18.14	9.45

Protein Annotations

EnsemblPlants:Bra036496.1	EnsemblPlants:Bra036496.1-P	EnsemblPlantsGene:Bra036496	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375	SEG:seg	UniParc:UPI0002540E54	UniProt:M4F5Y7
MapMan:35.1	:	:	:	:	:

Description

AT2G20720 (E=1e-090) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA07:+:70503..72040

Molecular Weight (calculated)

55720.1 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.460

Length

485 amino acids

Sequence
(BLAST)

001: MNHLLRPQFG SFRSSLPFRC SFLRFPKTVP SPDPVHDSLK RRIERAPDSM PSLTHLLHEW RQLGNKPGLS ELRSIISSLH KLDRFSHALQ VSEWMSDQQV
101: YNLSTVDFEI RLLLIAKLGG LEEASKFLDT IPLKKRDFYV HNALLNSCKT HGSLSIAETT FQKMIDLGLA SNNPKPYNTM LSLYHSAGDH DMVVKLLLEM
201: DDQRLEPQGV PFGKLFSCFA LASCVKDFVG MEKFLNKWRD RMEPWATCFF PACLYMELGS LDKSLSLFRK TEELLDDDCR KNMYGALMRV YCHKGEREDV
301: YRLSNLAKLH GISFDATVTS EMIKFFALKH DFDGAHEIME EWDTGAGDLG LSDFGHRKRC MKEEADKAIN MLGKKWESKW ESLTDMLQQN LAEGEDEDGE
401: RERRKRVTEA LEGRLHERWN PKTTMTLSAY ACVQYVEGRR DMESAAEILK LLNKQELVSR AMDKDRLCLK MVEAMRGGGY VGGQD

Best Arabidopsis Sequence Match ( AT2G20720.1 )
(BLAST)

001: MLCLYHQAED HDMVVKLLGE MDEKKMQPQG LCFVKLLTSY SMASVVDVQG VEKFLSKWEV MIQDKWTTFY FPGLVYIRAG FMEKGLALLR RSETFVDDGC
101: REIIYGCLMT VYCNENLTED VYRLWNLAKD YGISFDSSRC SDIVKAFTKK GDLDGVMEEW NECPNLDLMD FGLQHRCVKE EAEKVVDMLG KKESKWESLA
201: HKVNTLVEDE DAKEEERRKR VAEAMEGRLH DRWNPKNSMA LSAFACVQYV EGRRDMESTA DILRLLNKRE QVSHAMDKNR LSLKMVEAMR GGGYVGGDD

Arabidopsis Description

At2g20720 [Source:UniProtKB/TrEMBL;Acc:Q8L705]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.