Factsheet for TraesCS1A01G168700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G188200.1	Wheat	mitochondrion	80.82	95.94
TraesCS1D01G166700.1	Wheat	mitochondrion	80.99	95.56
Os10t0501300-01	Rice	mitochondrion	52.23	59.45
OQU91552	Sorghum	mitochondrion	48.97	56.08
Os10t0501000-01	Rice	cytosol	42.98	55.65
Zm00001d032543_P001	Maize	mitochondrion	48.46	54.74
Os10t0501200-00	Rice	mitochondrion	53.6	50.0
GSMUA_Achr5P20750_001	Banana	mitochondrion	34.59	37.0
PGSC0003DMT400058755	Potato	cytosol	23.8	35.19
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	25.68	33.04
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	26.71	32.64
AT2G20710.1	Thale cress	mitochondrion	27.23	32.45
PGSC0003DMT400047256	Potato	extracellular	17.81	32.2
Bra036673.1-P	Field mustard	mitochondrion	26.2	32.01
CDY39781	Canola	mitochondrion	26.2	32.01
CDY03299	Canola	mitochondrion	25.86	31.92
Solyc07g054100.1.1	Tomato	cytosol	17.64	31.89
CDY35213	Canola	cytosol	2.23	31.71
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	27.05	31.54
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	25.0	29.61
KRH22399	Soybean	cytosol	23.97	29.41
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	25.0	29.32
KRH26940	Soybean	cytosol	24.83	29.23
TraesCS5A01G099700.1	Wheat	mitochondrion	25.0	28.63
CDY65573	Canola	mitochondrion	17.81	28.11
CDY35212	Canola	mitochondrion	13.36	27.76
TraesCS6A01G358600.1	Wheat	mitochondrion	24.49	27.66
TraesCS6A01G090900.1	Wheat	mitochondrion	22.6	27.56
Bra011054.1-P	Field mustard	mitochondrion	15.92	27.27
TraesCS2A01G552700.1	Wheat	mitochondrion	25.34	26.86
TraesCS2A01G391600.1	Wheat	plastid	23.12	26.84
TraesCS1A01G168800.1	Wheat	mitochondrion	23.29	26.61
TraesCS6A01G091100.1	Wheat	mitochondrion	22.95	26.43
TraesCS2A01G552100.1	Wheat	mitochondrion	24.83	26.36
TraesCS6A01G091000.1	Wheat	mitochondrion	22.43	25.69
AT1G43010.1	Thale cress	mitochondrion	11.3	25.68
AT1G28020.1	Thale cress	cytosol, plastid	21.58	25.51
TraesCS6A01G090800.2	Wheat	mitochondrion	20.72	25.1
CDY00734	Canola	mitochondrion	7.53	24.86
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.6	24.58
TraesCS4A01G428500.1	Wheat	mitochondrion	22.6	24.49
CDY27645	Canola	mitochondrion	10.79	24.32
TraesCS6A01G091200.2	Wheat	cytosol	14.9	23.84
TraesCS2A01G318100.1	Wheat	mitochondrion	16.61	23.15
CDY71968	Canola	plastid	11.47	22.95
Bra036496.1-P	Field mustard	plastid	19.01	22.89
CDY05786	Canola	plastid	19.01	22.89
CDY31943	Canola	plastid	18.66	22.47
AT3G11380.1	Thale cress	mitochondrion	20.55	22.18
CDY48421	Canola	mitochondrion	14.55	20.58
TraesCS7A01G296400.1	Wheat	mitochondrion	17.98	20.47
Bra032862.1-P	Field mustard	mitochondrion	13.18	20.32
CDY27647	Canola	mitochondrion	14.04	20.15
Bra032863.1-P	Field mustard	mitochondrion	13.7	20.0
AT3G11350.1	Thale cress	mitochondrion	12.16	19.78
TraesCS3A01G191200.1	Wheat	mitochondrion	19.86	18.95
AT1G28000.1	Thale cress	mitochondrion	12.5	18.81
Bra032865.1-P	Field mustard	cytosol	16.61	16.9
CDY53325	Canola	mitochondrion	20.03	16.76
AT2G20720.1	Thale cress	cytosol	8.39	16.39
Bra001400.1-P	Field mustard	mitochondrion, plastid	20.55	16.02
CDY53324	Canola	mitochondrion, plastid	19.86	15.87
CDX73880	Canola	mitochondrion	12.67	14.77
CDY66759	Canola	cytosol	17.98	14.06
Bra032866.1-P	Field mustard	mitochondrion	14.04	12.85

Protein Annotations

EnsemblPlants:TraesCS1A01G168700.1	EnsemblPlantsGene:TraesCS1A01G168700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF625
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:301629967..301631797

Molecular Weight (calculated)

66200.3 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.291

Length

584 amino acids

Sequence
(BLAST)

001: MSYPQNVRSG SSCPRTSARY RAPIFLYFQN SPFSFSPLAD SSLSPLPFGL TTLKPIQHKA HLSPFPIPKP SPPLPPPPPA SNRRSGRATM HRLLPPRGCL
101: LRRLSTAAET SAALPHPPRR PLADSLYRRV TAVWNPNLPL TPVLEQWAVT EGRAVEKNNL MCIVKKLVRL RRFSHALELS MWMTDRRYMY LSPGDVAYRL
201: ELISKVQGLE SAVNYWKSLS IQVKKSHCYG SLLKCYAEAK SVDEAEKLFA EMQDLGMMRS YPYNVMMKLY WETGQVERVH TMYRTMEESG IKPDVFSINI
301: LLTVLAAAGN FDGIEEIIKK VDPKIVNWHS HAIVARAFME AGQQGKALRA IQESEKQIGR KDERVAYGFL LSMFADLGMS SEADRVWNVY KSKVPVCNSM
401: YMCRISGLLK MNDIDSAEKA FREWESRYVH HDIHLTNLLI NAYCAKGLME KAEALLDEAI AKGRTPHRGT WYRLASGFFQ DGQVSKAVDM TRKALACASS
501: RWEPDLTNVL MSLEHFMEQK NVEAAEEMAS MLRNLVPLTR DVYHILLETY VHAGQPVSDL LDRMKKDGFE ADEETDKIIA GICQ

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.