CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036673.1-P	Field mustard	mitochondrion	98.54	98.54
CDY03299	Canola	mitochondrion	94.77	95.77
AT2G20710.1	Thale cress	mitochondrion	81.59	79.59
CDY35213	Canola	cytosol	3.56	41.46
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	41.63	39.88
CDY65573	Canola	mitochondrion	30.33	39.19
CDY35212	Canola	mitochondrion	22.38	38.08
PGSC0003DMT400047256	Potato	extracellular	25.1	37.15
Solyc07g054100.1.1	Tomato	cytosol	24.9	36.84
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	37.87	36.35
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	37.24	36.11
KRH22399	Soybean	cytosol	35.77	35.92
KRH26940	Soybean	cytosol	35.98	34.68
CDY71968	Canola	plastid	20.29	33.22
CDY27645	Canola	mitochondrion	17.78	32.82
CDY00734	Canola	mitochondrion	12.13	32.77
Os10t0501300-01	Rice	mitochondrion	34.1	31.77
CDY31943	Canola	plastid	32.01	31.55
TraesCS1B01G188200.1	Wheat	mitochondrion	32.43	31.5
CDY05786	Canola	plastid	31.8	31.34
GSMUA_Achr5P20750_001	Banana	mitochondrion	35.15	30.77
TraesCS1D01G166700.1	Wheat	mitochondrion	31.8	30.71
OQU91552	Sorghum	mitochondrion	32.01	30.0
Os10t0501000-01	Rice	cytosol	27.2	28.82
CDY24553	Canola	mitochondrion	17.36	28.82
CDX91277	Canola	mitochondrion	31.17	28.71
CDX97288	Canola	mitochondrion	30.75	28.6
CDY27647	Canola	mitochondrion	24.27	28.5
CDX98698	Canola	mitochondrion	28.87	28.28
Zm00001d032543_P001	Maize	mitochondrion	29.92	27.66
CDY48421	Canola	mitochondrion	23.85	27.6
CDY15126	Canola	cytosol, mitochondrion, plastid	29.29	27.34
CDX90079	Canola	mitochondrion	28.87	26.95
CDX99984	Canola	mitochondrion	26.57	26.57
CDY50357	Canola	mitochondrion	11.09	26.5
TraesCS1A01G168700.1	Wheat	mitochondrion	32.01	26.2
CDY19721	Canola	mitochondrion	25.52	25.58
CDY25035	Canola	mitochondrion, plastid	26.15	25.51
Os10t0501200-00	Rice	mitochondrion	33.05	25.24
CDY15237	Canola	mitochondrion	26.78	24.95
CDX89976	Canola	mitochondrion	26.57	24.66
CDX96239	Canola	mitochondrion	25.31	24.64
CDY44801	Canola	mitochondrion	20.71	24.5
CDY46999	Canola	mitochondrion	25.1	24.44
CDY34141	Canola	mitochondrion	24.9	24.19
CDY05574	Canola	mitochondrion	26.15	23.86
CDX91822	Canola	mitochondrion	24.06	23.0
CDX90962	Canola	mitochondrion	23.43	22.36
CDY50358	Canola	cytosol	9.83	20.0
CDY36566	Canola	mitochondrion	25.1	19.97
CDY53325	Canola	mitochondrion	29.08	19.91
CDY39654	Canola	mitochondrion	24.9	19.8
CDY57695	Canola	mitochondrion	24.9	19.73
CDY53324	Canola	mitochondrion, plastid	30.13	19.7
CDX94049	Canola	cytosol	28.66	19.52
CDY09903	Canola	mitochondrion	21.55	19.43
CDX73880	Canola	mitochondrion	20.29	19.36
CDY06272	Canola	mitochondrion	21.13	19.06
CDX97686	Canola	plastid	23.85	18.39
CDY30088	Canola	plastid	23.64	18.31
CDY24554	Canola	cytosol	5.23	16.34
CDY66759	Canola	cytosol	24.69	15.8
CDX79395	Canola	cytosol	24.9	11.61
CDY36565	Canola	cytosol	1.26	1.79

Protein Annotations

EnsemblPlants:CDY39781	EnsemblPlantsGene:GSBRNA2T00068584001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY39781	ProteinID:CDY39781.1	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0004EF3D55	UniProt:A0A078HQ76	MapMan:35.1	:	:

Description

BnaA09g10330DBnaA09g10330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ76]

Coordinates

chrLK032457:+:123811..125331

Molecular Weight (calculated)

54776.6 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.303

Length

478 amino acids

Sequence
(BLAST)

001: MNHLLLLLRL VRPKPNYTLR SFPFHSTRTL PHDTLQRRVA RAGDPSASIL RVLEGWLDEG NPVKTSELHS IVKMLRKFSR FSHALQISDW MSEHRVHDIS
101: EGDIAIRLDL IAKVNGLGEA DKFFEKIPIE RRNYHLYGAL LNCYATKKVL HKADQLFHEM KDLGFLRGCL PYNVMLNLYI RCGKHALLDK LLREMEDGNV
201: KPDIFTVNTR LHAYSLVSDV EGMEKFLTRC ESDPGLDLDL DWRTYADAAN AYIKAGSTEK AMEMLRRSEQ LVSPQKRKHA YEVLMSFYGA AGEKQEVYRL
301: WALYKELGGF FNTGYISVIS ALFKAGDIEG VEKIMGEWEA GHSLFYVRIP HLLITGYCKK GMMDKAEEVA KMVLQETSTW ERLALGYKMA GEMEKAVERW
401: KKAIEVSKPG WRPHKVVLMS CVDYVEGQRD IEGLRKILRL LSERGHISYD QLLYDMKEAG GGLGWKIVDA MGSSQVQH

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.