CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65573	Canola	mitochondrion	95.02	72.16
AT1G43010.1	Thale cress	mitochondrion	42.7	46.69
CDY00734	Canola	mitochondrion	24.56	38.98
CDY27645	Canola	mitochondrion	35.59	38.61
CDY71968	Canola	plastid	33.1	31.85
CDY27647	Canola	mitochondrion	40.57	28.01
CDY48421	Canola	mitochondrion	40.93	27.84
CDY50357	Canola	mitochondrion	17.44	24.5
CDY39781	Canola	mitochondrion	38.08	22.38
CDY24553	Canola	mitochondrion	22.78	22.22
CDY03299	Canola	mitochondrion	37.01	21.99
CDX73880	Canola	mitochondrion	35.23	19.76
CDY44801	Canola	mitochondrion	27.76	19.31
CDY31943	Canola	plastid	32.74	18.97
CDY05786	Canola	plastid	32.03	18.56
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	30.96	17.43
KRH26940	Soybean	cytosol	29.18	16.53
CDY53325	Canola	mitochondrion	40.93	16.48
CDY53324	Canola	mitochondrion, plastid	41.99	16.14
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	28.47	16.06
KRH22399	Soybean	cytosol	27.05	15.97
Os10t0501000-01	Rice	cytosol	25.62	15.96
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	27.76	15.82
TraesCS1B01G188200.1	Wheat	mitochondrion	27.4	15.65
CDX91277	Canola	mitochondrion	28.83	15.61
Os10t0501300-01	Rice	mitochondrion	28.47	15.59
GSMUA_Achr5P20750_001	Banana	mitochondrion	30.25	15.57
CDX97288	Canola	mitochondrion	28.47	15.56
TraesCS1D01G166700.1	Wheat	mitochondrion	27.05	15.35
CDY15126	Canola	cytosol, mitochondrion, plastid	27.76	15.23
OQU91552	Sorghum	mitochondrion	27.4	15.1
CDX90079	Canola	mitochondrion	27.05	14.84
Zm00001d032543_P001	Maize	mitochondrion	26.69	14.51
CDY19721	Canola	mitochondrion	23.84	14.05
CDX99984	Canola	mitochondrion	23.84	14.02
CDX98698	Canola	mitochondrion	24.2	13.93
CDY15237	Canola	mitochondrion	24.91	13.65
CDX89976	Canola	mitochondrion	24.91	13.59
CDY25035	Canola	mitochondrion, plastid	23.49	13.47
CDX96239	Canola	mitochondrion	23.49	13.44
TraesCS1A01G168700.1	Wheat	mitochondrion	27.76	13.36
CDY46999	Canola	mitochondrion	23.13	13.24
CDY34141	Canola	mitochondrion	23.13	13.21
CDY05574	Canola	mitochondrion	24.2	12.98
CDY39654	Canola	mitochondrion	27.05	12.65
Os10t0501200-00	Rice	mitochondrion	28.11	12.62
CDY36566	Canola	mitochondrion	26.69	12.48
CDX91822	Canola	mitochondrion	22.06	12.4
Solyc07g054100.1.1	Tomato	cytosol	13.52	11.76
PGSC0003DMT400047256	Potato	extracellular	13.52	11.76
CDY66759	Canola	cytosol	30.96	11.65
CDX90962	Canola	mitochondrion	20.64	11.58
CDY57695	Canola	mitochondrion	24.2	11.28
CDY30088	Canola	plastid	23.13	10.53
CDX97686	Canola	plastid	23.13	10.48
CDY06272	Canola	mitochondrion	18.51	9.81
CDY09903	Canola	mitochondrion	18.51	9.81
CDX94049	Canola	cytosol	24.2	9.69
CDY35213	Canola	cytosol	1.07	7.32
CDX79395	Canola	cytosol	24.56	6.73
CDY36565	Canola	cytosol	1.42	1.19
CDY50358	Canola	cytosol	0.36	0.43
CDY24554	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY35212	EnsemblPlantsGene:GSBRNA2T00058120001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY35212	ProteinID:CDY35212.1	SEG:seg	UniParc:UPI0004EEE4B4
UniProt:A0A078HBT2	MapMan:35.1	:	:	:	:

Description

BnaA01g08190DBnaA01g08190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBT2]

Coordinates

chrLK032348:+:149397..150395

Molecular Weight (calculated)

31970.8 Da

IEP (calculated)

9.059

GRAVY (calculated)

-0.343

Length

281 amino acids

Sequence
(BLAST)

001: MMRHTMKLLG QQARRIQPSN IAPTSIRHAG TLVSPHRNNS ALLLRIATAI DQKTPVVEAL EQWKEQGNQV KPSDLRCIIK KLQDSERFSH ALQISEWMSS
101: HRVYTLFPED MASRVLLIDT VLGLKEAERF FETIPETMKD YTVYTSLLTL YTRNDTTLDK AEAVFEKMRE IGFLLKPTPF NLMLSLYSPL KRHDNVNSLL
201: SEMEDNNVKP DDLTANHALS VYAAVSNIKA MEKFLSSNQR IKLEWGTCID MAKAYLKSGA TEKSLAMLHR TELRGGEGRC V

Best Arabidopsis Sequence Match ( AT1G43010.1 )
(BLAST)

001: MGKAQIIQHQ ARRILSQSNR NCLFRRSYET LPAANQTLPS RIKTDINQKA SIIPLLEQWR KQGYEVNPSH LRGLIKNLSD CKNFTTALEA SKWMFKHSVF
101: DNFPEDCAAQ LHLVNTVLGL EEAEKMFKNI PEKMRDYSVL LSSYTKPVRT VDKAEATFKK MRELGFLLKP YLFNSMICLY GQLQRLDMVE KLLYKLKKNN
201: MEVGSLKVNN VSRVYANINA MEKFKTWVSK EGIELERDTI VAMAKAYHRA GSIEKAR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g43010 [Source:UniProtKB/Swiss-Prot;Acc:Q9C545]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.