CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39654	Canola	mitochondrion	95.67	95.67
CDY57695	Canola	mitochondrion	64.73	64.51
CDX97686	Canola	plastid	41.76	40.48
CDY30088	Canola	plastid	40.77	39.71
CDX79395	Canola	cytosol	64.56	37.85
CDY24553	Canola	mitochondrion	15.47	32.29
CDY50357	Canola	mitochondrion	9.65	29.0
CDY46999	Canola	mitochondrion	22.3	27.29
CDX96239	Canola	mitochondrion	22.3	27.29
CDY34141	Canola	mitochondrion	22.3	27.24
CDY00734	Canola	mitochondrion	7.99	27.12
CDY35212	Canola	mitochondrion	12.48	26.69
CDY65573	Canola	mitochondrion	15.81	25.68
PGSC0003DMT400092266	Potato	mitochondrion	7.82	25.41
CDY39781	Canola	mitochondrion	19.97	25.1
CDY03299	Canola	mitochondrion	19.63	24.95
GSMUA_Achr1P17120_001	Banana	mitochondrion	21.13	24.42
CDX98698	Canola	mitochondrion	19.13	23.57
CDX91277	Canola	mitochondrion	20.3	23.51
Solyc06g005140.2.1	Tomato	mitochondrion	20.3	23.46
CDX97288	Canola	mitochondrion	19.97	23.35
CDX99984	Canola	mitochondrion	18.47	23.22
CDX91822	Canola	mitochondrion	19.3	23.2
PGSC0003DMT400077284	Potato	mitochondrion	19.97	22.9
VIT_16s0039g02800.t01	Wine grape	cytosol	18.97	22.89
CDY25035	Canola	mitochondrion, plastid	18.64	22.86
CDX90962	Canola	mitochondrion	18.97	22.75
PGSC0003DMT400031020	Potato	cytosol	4.49	22.69
Os12t0527900-01	Rice	mitochondrion	19.3	22.57
CDY19721	Canola	mitochondrion	17.8	22.43
CDY27645	Canola	mitochondrion	9.65	22.39
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	19.47	22.33
CDY44801	Canola	mitochondrion	14.97	22.28
CDY24554	Canola	cytosol	5.66	22.22
CDY05574	Canola	mitochondrion	19.3	22.14
HORVU5Hr1G027150.1	Barley	mitochondrion	18.64	21.79
CDY06272	Canola	mitochondrion	19.13	21.7
TraesCS5A01G099700.1	Wheat	mitochondrion	18.3	21.57
TraesCS5D01G112000.1	Wheat	mitochondrion	18.14	21.37
TraesCS5B01G104900.1	Wheat	mitochondrion	18.14	21.37
Zm00001d023915_P001	Maize	mitochondrion	17.8	21.36
CDY09903	Canola	mitochondrion	18.8	21.32
CDY50358	Canola	cytosol	8.15	20.85
CDX89976	Canola	mitochondrion	17.64	20.58
CDY15237	Canola	mitochondrion	17.47	20.47
CDY15126	Canola	cytosol, mitochondrion, plastid	16.97	19.92
CDX90079	Canola	mitochondrion	16.97	19.92
PGSC0003DMT400031016	Potato	cytosol	9.98	19.74
CDY71968	Canola	plastid	9.48	19.52
OQU79216	Sorghum	cytosol	17.8	19.49
CDY05786	Canola	plastid	14.81	18.35
CDY27647	Canola	mitochondrion	12.31	18.18
CDY31943	Canola	plastid	14.64	18.14
CDY48421	Canola	mitochondrion	11.65	16.95
CDX94049	Canola	cytosol	18.47	15.81
CDY53325	Canola	mitochondrion	16.14	13.9
CDY53324	Canola	mitochondrion, plastid	15.31	12.59
CDY35213	Canola	cytosol	0.83	12.2
CDX73880	Canola	mitochondrion	9.65	11.58
CDY66759	Canola	cytosol	14.31	11.51
CDY36565	Canola	cytosol	2.33	4.18

Protein Annotations

EnsemblPlants:CDY36566	EnsemblPlantsGene:GSBRNA2T00062254001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY36566	ProteinID:CDY36566.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEF59D	UniProt:A0A078HFP3	MapMan:16.12.5.4.19	:	:

Description

BnaA06g10190DBnaA06g10190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFP3]

Coordinates

chrLK032378:+:183426..185757

Molecular Weight (calculated)

67877.2 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.439

Length

601 amino acids

Sequence
(BLAST)

001: MFALSKVVRR SQSLRLGACN AVYYSKLEIP LGERNGSDES SALIHDKHEA FSSSYELPWN FPTGRRSLSS DAGARSSGEE DEIESLGTPD DTSGDSEDGL
101: QSEEELSCDE GDIDGAELEL LSEAGKTPGS KRSSELFKAI VSVSGLSVAS ALDKWVEEGK EINRTEIANA MLQLRRRRMY GRALQLAEWL EEHKQYEWEE
201: RDYASRLDLI AKVRGLYKGE LYVERIPESF RGELVYRTLL ANYASTSNVR KAEAVFNKMK DLGFPRTSYA CDQMLMLYKR VDKKKIADVL SMMEKENLKP
301: TLYTYKILID AKGATNDISG MEEIVETMKS EGVEVDLRAK SIVARHYASA GLKEKAEKVL KEMEGESLMA NRYVWKDLLS IYGFLQRADE VSRIWKICEA
401: NNPFYKESLA AILAFGKINK VKEAEAVFKK SVKMGHRVSS GMYSVLLRVY VDHKMVSEGK DLVKRMVDSG CNIGALTWDA LIRLYVEAGE VEKADASLSK
501: ATQLKQIKPL MSSFMYVMDE YARKGDVHNT EKIFQWMRQS GYHSRFRQFQ SLIQAYVNAK APAYGMKDRM KADNVFPNRG LAILLANADP FKKTPLSDLL
601: D

Best Arabidopsis Sequence Match ( AT1G15480.1 )
(BLAST)

001: MFALSKVLRR SQSLRLGACN AVYSKLDIPL GERNIAIESN ALIHDKHEAL PRFYELSWSS STGRRSLSSD AGAKTTGDDD DLEDKNVDLA TPDETSSDSE
101: DGEEFSGDEG DIEGAELELH VPESKRPSEM FKAIVSVSGL SVGSALDKWV EQGKDTNRKE FESAMLQLRK RRMFGRALQM TEWLDENKQF EMEERDYACR
201: LDLISKVRGW YKGEAYIKTI PESFRGELVY RTLLANHVAT SNVRTAEAVF NKMKDLGFPL STFTCNQMLI LYKRVDKKKI ADVLLLLEKE NLKPNLNTYK
301: ILIDTKGSSN DITGMEQIVE TMKSEGVELD LRARALIARH YASAGLKEKA EKVLKEMEGE SLEENRHMCK DLLSVYGYLQ REDEVRRVWK ICEENPRYNE
401: VLAAILAFGK IDKVKDAEAV FEKVLKMSHR VSSNVYSVLL RVYVDHKMVS EGKDLVKQMS DSGCNIGALT WDAVIKLYVE AGEVEKAESS LSKAIQSKQI
501: KPLMSSFMYL MHEYVRRGDV HNTEKIFQRM KQAGYQSRFW AYQTLIQAYV NAKAPAYGMK ERMKADNIFP NKRLAAQLAK ADPFKKTPLS DLLD

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g15480, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XI21]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.