Factsheet for Os12t0527900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G112000.1	Wheat	mitochondrion	84.82	85.49
TraesCS5B01G104900.1	Wheat	mitochondrion	84.44	85.1
TraesCS5A01G099700.1	Wheat	mitochondrion	84.44	85.1
HORVU5Hr1G027150.1	Barley	mitochondrion	84.82	84.82
Zm00001d023915_P001	Maize	mitochondrion	81.71	83.83
OQU79216	Sorghum	cytosol	82.68	77.41
GSMUA_Achr1P17120_001	Banana	mitochondrion	61.48	60.77
VIT_16s0039g02800.t01	Wine grape	cytosol	50.78	52.41
Solyc06g005140.2.1	Tomato	mitochondrion	49.81	49.23
PGSC0003DMT400077284	Potato	mitochondrion	50.0	49.05
Bra018528.1-P	Field mustard	mitochondrion	49.03	49.03
CDX91277	Canola	mitochondrion	49.42	48.94
CDX97288	Canola	mitochondrion	48.83	48.83
PGSC0003DMT400092266	Potato	mitochondrion	17.32	48.11
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	48.83	47.9
AT4G02820.1	Thale cress	mitochondrion	48.64	46.99
PGSC0003DMT400031020	Potato	cytosol	10.7	46.22
PGSC0003DMT400031016	Potato	cytosol	24.9	42.11
Os04t0544400-00	Rice	plastid	30.74	30.92
Os02t0796400-00	Rice	mitochondrion	30.35	30.17
Os04t0450200-01	Rice	cytosol	16.93	29.79
Os10t0501300-01	Rice	mitochondrion	29.18	29.24
Os01t0301000-01	Rice	mitochondrion	28.4	27.97
Os04t0320200-01	Rice	mitochondrion	28.02	27.48
Os07t0598500-01	Rice	mitochondrion	26.07	26.48
Os10t0501000-01	Rice	cytosol	22.96	26.16
Os01t0301500-01	Rice	cytosol, mitochondrion	23.74	25.21
Os01t0301700-01	Rice	mitochondrion	24.51	25.0
Os10t0501200-00	Rice	mitochondrion	27.24	22.36
Os01t0280400-00	Rice	mitochondrion	23.35	19.64
Os12t0170100-01	Rice	mitochondrion	23.15	19.48
CDY36566	Canola	mitochondrion	22.57	19.3
Os07t0222700-01	Rice	mitochondrion	3.89	10.1
CDY36565	Canola	cytosol	1.17	1.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:9272023	ProteinID:ABA99305.2	EMBL:AK099985	EMBL:AK101013
ProteinID:BAT17420.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os12g0527900	EnsemblPlants:Os12t0527900-01	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	UniProt:Q2QPI7	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000D89DFE	RefSeq:XP_015620756.1	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os12t0527900-01)

Coordinates

chr12:+:20814294..20816272

Molecular Weight (calculated)

58450.7 Da

IEP (calculated)

9.084

GRAVY (calculated)

-0.361

Length

514 amino acids

Sequence
(BLAST)

001: MLMSRRLVPA AAAARMASSS SSAAAAAVSG GAEGGGGEGR GGDTLGRRLL KLIYPKRSAA VVLRRWAEEG RTVQKYQLNR VVRELRKYRR FKHALEICEW
101: MRTQPEMRLL PGDHAVHLDL VAKVRGLPSA EKFFEDMPER AKGPSTCNAL LHAYVQHGRR DKAEAMLEEM AKAGYLTCAL PFNHMMSLYM SSGELEKVPE
201: MIKELRRYTI PDLVTYNIWL TYCSKKNSVK AAEKVYDLMK DERVVPDWMT FSLLGSIYIN AGLHVKGRDA LVEMEKRASR KERAAYSSLL TLYASLSDRG
301: NLDRVWRKMR ETFRKFSDTE YKCMLTSLTR FGDIAEAESF YSEWESASGT RDSRIPNTIL AFYIKNGMME KAEGFLDHIV QKGVKPSYST WELFVWGYLS
401: DGRMDKVLEC LKKALSCLEK WDPNPQLATA IYSQIEEKGD IEAAEKLLVM FREAGYVTTE IYNSVLRTYA KAELMPLIVD ERMDQDKVSM DDETRSLLRL
501: TSKYPIGEVS TLMS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.