Factsheet for Os01t0280400-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0170100-01	Rice	mitochondrion	95.09	95.09
TraesCS3D01G195000.1	Wheat	mitochondrion	72.18	71.94
TraesCS3A01G191200.1	Wheat	mitochondrion	71.85	71.73
TraesCS3B01G220600.2	Wheat	mitochondrion	71.69	71.45
HORVU3Hr1G040710.1	Barley	mitochondrion	70.87	70.75
OQU86720	Sorghum	mitochondrion	70.21	69.98
Zm00001d040475_P001	Maize	mitochondrion	69.39	69.17
Zm00001d008224_P002	Maize	mitochondrion	66.45	65.27
GSMUA_Achr5P27560_001	Banana	cytosol	47.3	56.34
GSMUA_Achr8P21680_001	Banana	mitochondrion	55.81	55.18
KRH66764	Soybean	cytosol	36.33	53.49
VIT_08s0007g05090.t01	Wine grape	mitochondrion	51.55	50.48
GSMUA_Achr11P...	Banana	mitochondrion	50.57	49.2
KRH69049	Soybean	mitochondrion	48.94	49.1
KRH31614	Soybean	mitochondrion	47.3	48.17
KRG95098	Soybean	mitochondrion	46.81	46.89
Solyc12g020050.1.1	Tomato	plastid	47.63	46.63
PGSC0003DMT400022632	Potato	mitochondrion	47.14	46.15
CDY39654	Canola	mitochondrion	44.03	44.76
CDY57695	Canola	mitochondrion	43.86	44.44
AT1G80270.2	Thale cress	mitochondrion	42.72	43.79
AT1G15480.1	Thale cress	mitochondrion	42.23	43.43
PGSC0003DMT400021596	Potato	mitochondrion	42.06	41.92
AT3G15590.2	Thale cress	cytosol, mitochondrion	41.24	41.31
Bra027226.1-P	Field mustard	plastid	37.97	38.54
Bra003559.1-P	Field mustard	cytosol	43.37	37.22
CDX97686	Canola	plastid	37.48	36.94
CDY30088	Canola	plastid	36.5	36.14
Bra026128.1-P	Field mustard	cytosol	44.03	28.89
CDX79395	Canola	cytosol	44.03	26.24
Os10t0501300-01	Rice	mitochondrion	20.29	24.17
Os04t0320200-01	Rice	mitochondrion	20.62	24.05
Os12t0527900-01	Rice	mitochondrion	19.64	23.35
Os07t0598500-01	Rice	mitochondrion	18.49	22.33
Os01t0301000-01	Rice	mitochondrion	18.99	22.22
Os10t0501000-01	Rice	cytosol	16.2	21.95
Os04t0544400-00	Rice	plastid	18.33	21.92
Os02t0796400-00	Rice	mitochondrion	18.33	21.66
Os04t0450200-01	Rice	cytosol	9.98	20.89
Os01t0301700-01	Rice	mitochondrion	16.86	20.44
Os10t0501200-00	Rice	mitochondrion	20.62	20.13
Os01t0301500-01	Rice	cytosol, mitochondrion	14.24	17.98
Os07t0222700-01	Rice	mitochondrion	5.56	17.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.5.4.19	EntrezGene:4326909	ProteinID:BAD81093.1	ProteinID:BAD81589.1	ProteinID:BAS71593.1
ProteinID:EAZ11451.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os01g0280400
EnsemblPlants:Os01t0280400-00	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat	UniProt:Q5NAB7	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000049E66A	RefSeq:XP_015644919.1	SEG:seg	:	:	:

Description

DNA-binding protein. (Os01t0280400-00)

Coordinates

chr1:+:9962807..9966715

Molecular Weight (calculated)

69195.1 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.406

Length

611 amino acids

Sequence
(BLAST)

001: MWALRRAGNP LRVRAYQALS ARGCANLEVI LNADAKNVEE HHERDCQKLD CCHQPKPLVC QSSFSSGRFM WSRVFSSQAG ASSGDKQDEL EEGFSDLEVP
101: PEADKKDLDL TSDESSDEDT IDAIGLSQVE ADAKPEEPIK KSQSTLLKAL LVSPRVDVAG ATKKWLNDGN TLERSELFYV LLSLRKRKLY TKALQLLEYV
201: EESKLFDLGE RDYASRVDLV AKVHGIYKAE KYIENVPASH RGEVVYRTLL ANCVAIANVK KTEQVFNKMK DLGFPVTVFS CNQLLLLYKR VDKKKLGDVL
301: TMMEKENVKP SLFTYKLLVD TKGAARDIED MEKVIQAMQA DGIEPDLLIQ ATIARHYIFG GYREKAEAIL EQIEGDDINE NRSACKFVLP LYAFLGKKAD
401: VERIWKVCEV NARLDECMSA IEAFGKLGDV EKAEEIFENM FKTWKTLSFE YYNAMLKVYA NKKLFDKGKE LAKRMGDDGC RLGPSTLDSL VKLYSDAGEV
501: EKADSILHKL SYKNKIKPLY TTYLMLLDSY SKKGDVHNAE KLFSKVRQMG YTGRIRQYQL LLEAYLNAKT PPYGFKERMK ADDIFPNRAV ASLLAATDPF
601: NRKNAMSELL D

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.