Factsheet for PGSC0003DMT400022632

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g020050.1.1	Tomato	plastid	94.71	94.71
KRH66764	Soybean	cytosol	41.35	62.17
VIT_08s0007g05090.t01	Wine grape	mitochondrion	60.26	60.26
KRH69049	Soybean	mitochondrion	55.77	57.14
PGSC0003DMT400021596	Potato	mitochondrion	55.29	56.28
KRH31614	Soybean	mitochondrion	52.72	54.83
KRG95098	Soybean	mitochondrion	52.56	53.77
GSMUA_Achr5P27560_001	Banana	cytosol	44.07	53.61
AT1G80270.2	Thale cress	mitochondrion	51.12	53.52
CDY57695	Canola	mitochondrion	51.44	53.23
GSMUA_Achr8P21680_001	Banana	mitochondrion	51.44	51.94
CDY39654	Canola	mitochondrion	49.84	51.75
AT1G15480.1	Thale cress	mitochondrion	46.96	49.33
HORVU3Hr1G040710.1	Barley	mitochondrion	47.92	48.86
TraesCS3D01G195000.1	Wheat	mitochondrion	47.6	48.45
TraesCS3B01G220600.2	Wheat	mitochondrion	47.12	47.96
TraesCS3A01G191200.1	Wheat	mitochondrion	46.79	47.71
Os01t0280400-00	Rice	mitochondrion	46.15	47.14
Os12t0170100-01	Rice	mitochondrion	45.99	46.97
Zm00001d040475_P001	Maize	mitochondrion	45.51	46.33
OQU86720	Sorghum	mitochondrion	45.03	45.84
GSMUA_Achr11P...	Banana	mitochondrion	45.99	45.7
Zm00001d008224_P002	Maize	mitochondrion	44.55	44.69
Bra003559.1-P	Field mustard	cytosol	50.96	44.66
AT3G15590.2	Thale cress	cytosol, mitochondrion	42.47	43.44
Bra027226.1-P	Field mustard	plastid	41.67	43.19
CDY30088	Canola	plastid	40.71	41.17
CDX97686	Canola	plastid	40.87	41.13
Bra026128.1-P	Field mustard	cytosol	48.88	32.76
CDX79395	Canola	cytosol	50.96	31.02
PGSC0003DMT400031020	Potato	cytosol	5.29	27.73
PGSC0003DMT400002590	Potato	cytosol	19.07	24.19
PGSC0003DMT400077284	Potato	mitochondrion	20.19	24.05
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	18.91	24.03
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	20.03	23.86
PGSC0003DMT400058755	Potato	cytosol	15.06	23.8
PGSC0003DMT400092266	Potato	mitochondrion	7.05	23.78
PGSC0003DMT400032340	Potato	mitochondrion	17.79	22.93
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	18.27	22.89
PGSC0003DMT400023279	Potato	mitochondrion	18.11	22.83
PGSC0003DMT400069375	Potato	cytosol	17.31	22.78
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	17.15	22.38
PGSC0003DMT400007271	Potato	mitochondrion	17.31	22.36
PGSC0003DMT400011461	Potato	mitochondrion	13.94	21.75
PGSC0003DMT400031016	Potato	cytosol	10.42	21.38
PGSC0003DMT400047256	Potato	extracellular	11.06	21.36
PGSC0003DMT400004477	Potato	plastid	16.35	21.21
PGSC0003DMT400080049	Potato	cytosol, plastid	17.63	20.18

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102598161	MapMan:16.12.5.4.19	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AGZ2	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400008773	PGSC:PGSC0003DMG400008773
EnsemblPlants:PGSC0003DMT400022632	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294AC3D	RefSeq:XP_006348039.1	SEG:seg

Description

Pentatricopeptide repeat-containing protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400008773]

Coordinates

chr12:-:21732657..21737916

Molecular Weight (calculated)

70361.1 Da

IEP (calculated)

7.779

GRAVY (calculated)

-0.445

Length

624 amino acids

Sequence
(BLAST)

001: MWAVRRASSS FKKQVFMTGG SRICYATSDI SSQCLKGHND GLKGDSNVIS HRPLTYRGFQ ITSHGFLRVF RESRSFSSQA GTKRSGEEDS SSDDGFSELE
101: SSTATEAIQE VNKVDESVSE HELSEEDLDG EDVEAPQELL SDTEAEINKR KSPRNGVSSA LFNAIMAAPA LPVSKIMDKW VEGNNVTRVE VAAAMLNFRK
201: RRMYGKALQL SEWLESKNQL TFIDRDYASR VDLIAKVRGL KKAEDYIGTI PESFRNEVIY RTLLANCVAE GDLKKSEQVF NKMKDLEFPL TCFTYNQLLL
301: LYKKTDKKKI ADVLLLMEKE NVKPTHFTYR LLIDVKGQFN DISGMEQIVE TMKAEGLEPD VTTKSILVKH YISGGLNEKA ENVLKEMEGG DTKSTRWACR
401: SLLPHYAALG RADEVARIWQ VCESNPRLEE CVAAVDAWGK LHNIEEAEAI FDKMAAKWPT LSSKHYSVLL NIYANHKMLS KGKDLVKRMA DSGCRIGPVT
501: WDALVRLYIE AGEVEKADSI LHKAGEQNRL RPMINSYLMI MDQYAKKGDI HNTEKMFHRM RQAGYVSRAT QYQHLIRAYI NAKAPCYGIA DRMKADNIFP
601: NKGLANMLAQ VDAFKKNAVS DLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.