Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010993 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09450.1 | PGSC0003DMT400010993 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047370.1.1 | Tomato | mitochondrion | 97.0 | 97.24 |
| VIT_11s0078g00180.t01 | Wine grape | cytosol | 30.5 | 63.87 |
| KRH43872 | Soybean | mitochondrion | 61.25 | 62.03 |
| KRH10583 | Soybean | mitochondrion | 61.5 | 61.65 |
| Bra028632.1-P | Field mustard | mitochondrion | 55.0 | 54.46 |
| CDY44801 | Canola | mitochondrion | 54.75 | 54.21 |
| AT5G09450.1 | Thale cress | mitochondrion | 54.5 | 53.3 |
| Os04t0450200-01 | Rice | cytosol | 38.5 | 52.74 |
| GSMUA_Achr10P... | Banana | cytosol | 54.5 | 49.43 |
| EES10908 | Sorghum | mitochondrion | 48.75 | 46.99 |
| HORVU3Hr1G070650.1 | Barley | cytosol | 16.25 | 44.83 |
| TraesCS2A01G318100.1 | Wheat | mitochondrion | 45.5 | 43.44 |
| TraesCS2B01G336200.1 | Wheat | mitochondrion | 44.75 | 42.72 |
| HORVU2Hr1G079080.2 | Barley | cytosol | 29.0 | 42.18 |
| Zm00001d003500_P001 | Maize | mitochondrion | 44.5 | 42.08 |
| TraesCS2D01G315700.1 | Wheat | mitochondrion | 45.75 | 41.5 |
| HORVU1Hr1G085940.2 | Barley | cytosol | 17.25 | 40.59 |
| PGSC0003DMT400031020 | Potato | cytosol | 10.25 | 34.45 |
| PGSC0003DMT400092266 | Potato | mitochondrion | 15.25 | 32.97 |
| PGSC0003DMT400077284 | Potato | mitochondrion | 33.75 | 25.76 |
| PGSC0003DMT400012266 | Potato | cytosol, mitochondrion, plastid | 32.5 | 24.81 |
| PGSC0003DMT400004477 | Potato | plastid | 29.0 | 24.12 |
| PGSC0003DMT400080049 | Potato | cytosol, plastid | 30.25 | 22.2 |
| PGSC0003DMT400076352 | Potato | cytosol, mitochondrion | 26.0 | 21.76 |
| PGSC0003DMT400002590 | Potato | cytosol | 26.75 | 21.75 |
| PGSC0003DMT400032340 | Potato | mitochondrion | 26.25 | 21.69 |
| PGSC0003DMT400023279 | Potato | mitochondrion | 26.75 | 21.62 |
| PGSC0003DMT400047255 | Potato | cytosol, mitochondrion, plastid | 26.5 | 21.29 |
| PGSC0003DMT400007271 | Potato | mitochondrion | 25.5 | 21.12 |
| PGSC0003DMT400058755 | Potato | cytosol | 20.75 | 21.01 |
| PGSC0003DMT400076417 | Potato | cytosol, mitochondrion | 25.75 | 20.98 |
| PGSC0003DMT400047256 | Potato | extracellular | 14.5 | 17.96 |
| PGSC0003DMT400069375 | Potato | cytosol | 20.0 | 16.88 |
| PGSC0003DMT400031016 | Potato | cytosol | 11.5 | 15.13 |
| PGSC0003DMT400022632 | Potato | mitochondrion | 21.75 | 13.94 |
| PGSC0003DMT400021596 | Potato | mitochondrion | 19.25 | 12.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011461 | EnsemblPlantsGene:PGSC0003DMG400004497 | EntrezGene:102604238 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF504 | PFAM:PF13812 | PFscan:PS51375 | PGSC:PGSC0003DMG400004497 | RefSeq:XP_006359787.1 | TIGRFAMs:TIGR00756 |
| UniParc:UPI000295C4B4 | UniProt:M0ZZL0 | MapMan:35.1 | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004497]
Coordinates
chr10:-:30205069..30209868
Molecular Weight (calculated)
46042.2 Da
IEP (calculated)
6.396
GRAVY (calculated)
-0.353
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARTIFLKL TRNARGRERS LFRSFTTTTE VVYEDSPNSS EEERGETPDD LKSRIFSLRL PKRSATNALQ RWVGEGRLIS ISDLRHISKE LRKSRRFKHA
101: LEISEWLVYH NQDEALDSDY AIRIDLMTKV FGIDSAERYF EGLPTTVKTT ETCTALLHSY ASLRLTEKAE DLYERMKEAN LSLNTVTYNE MMTLYMSVGQ
201: LEKVPLIVEE MKLQKVAPDL FTYNLWVSSC AAALNIDKVR RILDEISRGS DSGEQWIRYM NLVNIYITSG NLVNSGLNSV VESEKGITQR EWISYDFLII
301: LYGALGNKEK LDQIWKSLRM TNQKMTSRNY ICILSSYLML GHMKEAGEII DQWKLSAATA FDRSSCNRLL KAYKELGLEE SAVDFRLLLI QKGCDEIEES
101: LEISEWLVYH NQDEALDSDY AIRIDLMTKV FGIDSAERYF EGLPTTVKTT ETCTALLHSY ASLRLTEKAE DLYERMKEAN LSLNTVTYNE MMTLYMSVGQ
201: LEKVPLIVEE MKLQKVAPDL FTYNLWVSSC AAALNIDKVR RILDEISRGS DSGEQWIRYM NLVNIYITSG NLVNSGLNSV VESEKGITQR EWISYDFLII
301: LYGALGNKEK LDQIWKSLRM TNQKMTSRNY ICILSSYLML GHMKEAGEII DQWKLSAATA FDRSSCNRLL KAYKELGLEE SAVDFRLLLI QKGCDEIEES
001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.