Factsheet for PGSC0003DMT400012266

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031020	Potato	cytosol	21.37	94.12
PGSC0003DMT400077284	Potato	mitochondrion	89.5	89.5
PGSC0003DMT400092266	Potato	mitochondrion	29.96	84.86
PGSC0003DMT400031016	Potato	cytosol	45.23	77.96
VIT_16s0039g02800.t01	Wine grape	cytosol	63.93	67.27
Bra018528.1-P	Field mustard	mitochondrion	54.58	55.64
AT4G02820.1	Thale cress	mitochondrion	56.49	55.64
CDX97288	Canola	mitochondrion	54.39	55.45
CDX91277	Canola	mitochondrion	54.01	54.53
GSMUA_Achr1P17120_001	Banana	mitochondrion	53.05	53.46
Os12t0527900-01	Rice	mitochondrion	47.9	48.83
TraesCS5D01G112000.1	Wheat	mitochondrion	47.14	48.43
HORVU5Hr1G027150.1	Barley	mitochondrion	47.33	48.25
TraesCS5B01G104900.1	Wheat	mitochondrion	46.95	48.24
TraesCS5A01G099700.1	Wheat	mitochondrion	46.95	48.24
Zm00001d023915_P001	Maize	mitochondrion	44.27	46.31
OQU79216	Sorghum	cytosol	45.61	43.53
PGSC0003DMT400011461	Potato	mitochondrion	24.81	32.5
PGSC0003DMT400047256	Potato	extracellular	19.08	30.96
PGSC0003DMT400023279	Potato	mitochondrion	29.01	30.71
PGSC0003DMT400080049	Potato	cytosol, plastid	30.73	29.54
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	27.48	28.92
PGSC0003DMT400004477	Potato	plastid	26.53	28.9
PGSC0003DMT400032340	Potato	mitochondrion	26.53	28.72
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	26.91	28.72
PGSC0003DMT400002590	Potato	cytosol	26.72	28.46
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	24.24	26.57
PGSC0003DMT400007271	Potato	mitochondrion	24.24	26.29
PGSC0003DMT400058755	Potato	cytosol	19.08	25.32
PGSC0003DMT400069375	Potato	cytosol	18.32	20.25
PGSC0003DMT400022632	Potato	mitochondrion	23.86	20.03
CDY36566	Canola	mitochondrion	22.33	19.47
PGSC0003DMT400021596	Potato	mitochondrion	20.99	17.94
CDY36565	Canola	cytosol	0.95	1.49

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102591148	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1A104	PFAM:PF01535	PFAM:PF13041
PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400004814	PGSC:PGSC0003DMG400004814	EnsemblPlants:PGSC0003DMT400012266	InterPro:PPR_long	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000294DF36	RefSeq:XP_015167864.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004814]

Coordinates

chr8:+:52277064..52279314

Molecular Weight (calculated)

60341.5 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.378

Length

524 amino acids

Sequence
(BLAST)

001: MLRRLVRRSY AVVRPLSTEV ATTVKSTRSG GGNGITTSLE GGTSTATSNR GRDTLGRRLL SLIYAKRSAV IAISKWKEEG RPVRKYELNR IVQELRKHKR
101: YKHALEVCEW MRVQDDIQLL YGDYAVHLDL IAKVRCMNSA KKFFEDLPDK LKVQTTCTAL LHTYVQHKNI AKAESLMKKM SECGFLNYHL PYNHMLTLYI
201: SQGQLEKVLG LIQELKKNTS PDIVTYNLEL AVFASQNNVE AAEKMLLELK KAKLDPDWIT FSTLTNIYIK SSLQDKANST LQEMEKKISR KARTAYVSLI
301: SLHTNLQNKD EVFRIWKEMK SIFRKVNDTE YSCIISLLLK LDEFGEAMNL YTEWEAVSVT KDTRIANLIL AAYINKNEME KAVNFHNKMM QKGISPSCTT
401: WELLTRGYLK QKEMDKVLEV FKKTVTSVSK WDPDAKMVRE MYHVVEEQGD IQVAEQLLVT LRHAKYVNTE IYNALLRTYV NAGKMPMIVE ERMKKDNVEM
501: DEETQKLIGI TSKMTVTEVP NEIA

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.