Factsheet for PGSC0003DMT400077284

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005140.2.1	Tomato	mitochondrion	96.37	97.12
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	89.5	89.5
PGSC0003DMT400031020	Potato	cytosol	20.23	89.08
PGSC0003DMT400092266	Potato	mitochondrion	30.15	85.41
PGSC0003DMT400031016	Potato	cytosol	43.89	75.66
VIT_16s0039g02800.t01	Wine grape	cytosol	64.31	67.67
Bra018528.1-P	Field mustard	mitochondrion	56.3	57.39
CDX97288	Canola	mitochondrion	56.11	57.2
AT4G02820.1	Thale cress	mitochondrion	57.82	56.95
CDX91277	Canola	mitochondrion	55.73	56.26
GSMUA_Achr1P17120_001	Banana	mitochondrion	53.82	54.23
Os12t0527900-01	Rice	mitochondrion	49.05	50.0
TraesCS5D01G112000.1	Wheat	mitochondrion	48.47	49.8
HORVU5Hr1G027150.1	Barley	mitochondrion	48.47	49.42
TraesCS5B01G104900.1	Wheat	mitochondrion	48.09	49.41
TraesCS5A01G099700.1	Wheat	mitochondrion	48.09	49.41
Zm00001d023915_P001	Maize	mitochondrion	45.23	47.31
OQU79216	Sorghum	cytosol	46.76	44.63
PGSC0003DMT400011461	Potato	mitochondrion	25.76	33.75
PGSC0003DMT400023279	Potato	mitochondrion	29.01	30.71
PGSC0003DMT400047256	Potato	extracellular	18.7	30.34
PGSC0003DMT400032340	Potato	mitochondrion	27.29	29.55
PGSC0003DMT400004477	Potato	plastid	26.91	29.31
PGSC0003DMT400002590	Potato	cytosol	27.29	29.07
PGSC0003DMT400080049	Potato	cytosol, plastid	29.96	28.81
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	27.29	28.71
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	26.72	28.51
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	24.24	26.57
PGSC0003DMT400007271	Potato	mitochondrion	24.05	26.09
PGSC0003DMT400058755	Potato	cytosol	19.47	25.82
PGSC0003DMT400069375	Potato	cytosol	18.7	20.68
PGSC0003DMT400022632	Potato	mitochondrion	24.05	20.19
CDY36566	Canola	mitochondrion	22.9	19.97
PGSC0003DMT400021596	Potato	mitochondrion	21.76	18.6
CDY36565	Canola	cytosol	0.95	1.49

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102586806	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CY57	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177
EnsemblPlantsGene:PGSC0003DMG400030062	PGSC:PGSC0003DMG400030062	EnsemblPlants:PGSC0003DMT400077284	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029557DA	RefSeq:XP_006366127.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030062]

Coordinates

chr6:-:7406801..7410499

Molecular Weight (calculated)

59976.8 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.389

Length

524 amino acids

Sequence
(BLAST)

001: MLLRLIRRSY AAVRPLSIEA STTVKSTRSG GGSSITTSLE GGTSTATSTR GRDTLGRRLL SLIYAKRSAV IAIRKWKEEG HPVRKYELNR IVRELRRHKR
101: FKHALEVCEW MRVQDDIELL SGDYAVHLDL IAKVRGMNSA EKFFEDLPDK LKVQTTCTAL LHTYVQHKDT AKAESLMEKM SECGFLKYPL PYNHMLTLYI
201: SQGQLEKVPG LIKELKKNTS PDIVTYNLEL AVFASQNNVE AAEKAFLELK KAKLDPDWIT FSTLTNIYIK SSLQDKAKST LREMEKRISR KGRTAYASLI
301: SLHTNLQSKD EVFRIWKEMK SLFRKVNDTE YSCIISSLLK LDEFGEAMNL YTEWEAGSVT KDTRIANLIL AAYINRSEME NAVDFHNRMA EKGITPSCTT
401: WKLLTQGYLK QKEMDKVVEF FKKTVTSVSK WDPDAKMVQE MFHVVEEQGD IQMAEQLLVT LRHAKYVNTE IYNALLRTYV NAGKMPMIVT ERMKKDNVEM
501: DEETRKLIGI TSKMTVTEVP NGVA

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.