Factsheet for PGSC0003DMT400069375

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071900.2.1	Tomato	mitochondrion	98.31	87.1
VIT_06s0004g04690.t01	Wine grape	mitochondrion	74.26	66.92
KRH10262	Soybean	mitochondrion	70.89	66.27
KRH23068	Soybean	mitochondrion	70.04	65.48
GSMUA_Achr9P23230_001	Banana	mitochondrion	64.77	58.81
AT1G07590.1	Thale cress	mitochondrion	66.03	58.61
CDY09903	Canola	mitochondrion	64.77	57.92
Bra031586.1-P	Field mustard	mitochondrion	64.77	57.82
CDY06272	Canola	mitochondrion	64.56	57.74
TraesCS7D01G293300.1	Wheat	mitochondrion	60.34	55.75
TraesCS7B01G189100.1	Wheat	mitochondrion	59.7	55.17
TraesCS7A01G296400.1	Wheat	mitochondrion	59.7	55.17
Zm00001d024521_P001	Maize	mitochondrion	59.28	54.67
HORVU7Hr1G066420.6	Barley	plastid	57.38	51.71
OQU79953	Sorghum	cytosol	60.55	45.92
PGSC0003DMT400002590	Potato	cytosol	23.21	22.36
PGSC0003DMT400023279	Potato	mitochondrion	22.15	21.21
PGSC0003DMT400047256	Potato	extracellular	14.35	21.05
PGSC0003DMT400031020	Potato	cytosol	5.27	21.01
PGSC0003DMT400058755	Potato	cytosol	17.3	20.76
PGSC0003DMT400032340	Potato	mitochondrion	20.46	20.04
PGSC0003DMT400011461	Potato	mitochondrion	16.88	20.0
PGSC0003DMT400080049	Potato	cytosol, plastid	23.0	20.0
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	20.68	19.96
PGSC0003DMT400004477	Potato	plastid	20.04	19.75
PGSC0003DMT400021596	Potato	mitochondrion	24.68	19.09
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	19.2	19.04
PGSC0003DMT400077284	Potato	mitochondrion	20.68	18.7
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	20.25	18.32
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	19.2	18.27
PGSC0003DMT400007271	Potato	mitochondrion	17.93	17.6
PGSC0003DMT400022632	Potato	mitochondrion	22.78	17.31
PGSC0003DMT400092266	Potato	mitochondrion	6.75	17.3
PGSC0003DMT400031016	Potato	cytosol	10.76	16.78

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0046686	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CKC7	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG402026981	PGSC:PGSC0003DMG402026981	EnsemblPlants:PGSC0003DMT400069375	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF588	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294D7CA
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402026981]

Coordinates

chr6:-:52687462..52692183

Molecular Weight (calculated)

54380.4 Da

IEP (calculated)

9.743

GRAVY (calculated)

-0.213

Length

474 amino acids

Sequence
(BLAST)

001: MVATRNNLSQ RIERVPIGES IGSTFQSWMG DGLPIHRGDI FHTMNRLRKL KLNKRALEVM EWVIRERPYR PKELDYSYLV EFTSKLHGIS QAESLFSRIP
101: SEFQNELLYN NLILGCLDRG LIRLSLAYMK KMRELDHPIS YLVFNHLIIL HSSPSRKKFI PKILTQMKAD KVTPHVSTFN ILLKIEANQH NIEGLLKVFG
201: DMKRAKVEPN EVSYCILANA HAVARLYTVC ETYIEAIEKS ATGQNWSTLD ILVILYGYLG KRNDLERTWG VILDLSHVRS KSYVLAIEAF GRIGDLCRAE
301: ELWSAMKSRN SLKSNEQFNS LIAVYCRHGH ITKATALYKE MEKSGCKPNA ITYRHLALGC LRAGLIKEAI KTLQLGMDME TSIKVKRSTP WLETTLSIIE
401: IFADNGDVEN AEKLFEELKK ANYTRYTFVY NALIKAYVKG KVYDPNLLKR MILGGARPDS ESYSLLKVID QFRT

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.