Factsheet for Zm00001d024521_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G293300.1	Wheat	mitochondrion	81.71	81.87
TraesCS7A01G296400.1	Wheat	mitochondrion	79.96	80.12
TraesCS7B01G189100.1	Wheat	mitochondrion	79.57	79.73
OQU79953	Sorghum	cytosol	94.75	77.92
HORVU7Hr1G066420.6	Barley	plastid	71.01	69.39
GSMUA_Achr9P23230_001	Banana	mitochondrion	63.81	62.84
PGSC0003DMT400069375	Potato	cytosol	54.67	59.28
KRH10262	Soybean	mitochondrion	57.59	58.38
KRH23068	Soybean	mitochondrion	56.23	57.0
VIT_06s0004g04690.t01	Wine grape	mitochondrion	57.98	56.65
AT1G07590.1	Thale cress	mitochondrion	55.45	53.37
CDY09903	Canola	mitochondrion	54.67	53.02
Solyc06g071900.2.1	Tomato	mitochondrion	54.67	52.52
Bra031586.1-P	Field mustard	mitochondrion	54.09	52.35
CDY06272	Canola	mitochondrion	53.7	52.08
Zm00001d032543_P001	Maize	mitochondrion	20.82	20.7
Zm00001d008224_P002	Maize	mitochondrion	24.9	20.58
Zm00001d002789_P001	Maize	plastid	20.43	20.47
Zm00001d003500_P001	Maize	mitochondrion	16.34	19.86
Zm00001d052030_P001	Maize	plastid	20.23	19.81
Zm00001d023915_P001	Maize	mitochondrion	19.07	19.56
Zm00001d009122_P001	Maize	mitochondrion	19.26	19.22
Zm00001d045492_P004	Maize	cytosol	21.4	18.46
Zm00001d040475_P001	Maize	mitochondrion	21.98	18.43
Zm00001d013923_P001	Maize	mitochondrion	17.51	18.0
Zm00001d011182_P001	Maize	endoplasmic reticulum	14.59	15.24
Zm00001d019185_P001	Maize	cytosol	21.21	10.51

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103641252	MapMan:35.1	ProteinID:AQK41364.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0046686	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7THS5
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF588	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002209CC1	EnsemblPlantsGene:Zm00001d024521	EnsemblPlants:Zm00001d024521_P001	EnsemblPlants:Zm00001d024521_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr10:-:75864894..75867823

Molecular Weight (calculated)

58668.6 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.242

Length

514 amino acids

Sequence
(BLAST)

001: MLLWRVLLRH RRPPFPVHAA GFFTSSGSNT TAPPPAGAEG LRDEPGEEGS LARRVERAAS VGAAMRGWMA DGRAVHRGHV FHAINRLRRH RLHRTALQVM
101: EWIVRERPYK LSELDYSYLL EFTAKVHGIS EAESLFLRVP QECRKELLYN NLVMAALDLN HIKHSYAYMR KMRELSLPIS PYVYNRLIIL HSSPGRRKTI
201: SKILSQMKAD RVVPHTSTYN ILLKIQANEH NIDGLARVFN GMKRAKIEPN EITYGILAIA HAVARLYTVC HTYVEAIENS MTGTNWSTLE ILLILYGYLG
301: KEKELKRTWE IMQDLPHIRS KSFTLAIEAF GKVGSIDQAE KIWIHIKSTK KLSLTEQFNS MLSVYCRHGV VDKASSVFKE MRANGCQPNA ITYRHLALGC
401: LKSGLVKEAL NTIDMGKKEV VTKKVRSSTP WLETTHLLLE NFAEIGDLEN AKRLYSELNE SKYSLNSFVY NTLLKAYVKA KVYEPDLSRT MILRGAMPDA
501: ETYSLLRLIE QFKI

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.