Factsheet for Zm00001d003500_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014640_P035
Zm00001d036507_P003
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT5G09450.1	Zm00001d036507_P003	AT2G44950.1	21798944
AT5G09450.1	Zm00001d053726_P001	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10908	Sorghum	mitochondrion	82.27	83.86
Os04t0450200-01	Rice	cytosol	52.96	76.71
TraesCS2B01G336200.1	Wheat	mitochondrion	68.79	69.45
TraesCS2A01G318100.1	Wheat	mitochondrion	68.79	69.45
HORVU3Hr1G070650.1	Barley	cytosol	23.4	68.28
TraesCS2D01G315700.1	Wheat	mitochondrion	68.09	65.31
HORVU2Hr1G079080.2	Barley	cytosol	41.84	64.36
HORVU1Hr1G085940.2	Barley	cytosol	24.35	60.59
GSMUA_Achr10P...	Banana	cytosol	53.19	51.02
Bra028632.1-P	Field mustard	mitochondrion	46.34	48.51
CDY44801	Canola	mitochondrion	46.1	48.27
VIT_11s0078g00180.t01	Wine grape	cytosol	21.75	48.17
KRH43872	Soybean	mitochondrion	43.74	46.84
AT5G09450.1	Thale cress	mitochondrion	44.44	45.97
KRH10583	Soybean	mitochondrion	43.26	45.86
PGSC0003DMT400011461	Potato	mitochondrion	42.08	44.5
Solyc10g047370.1.1	Tomato	mitochondrion	41.84	44.36
Zm00001d023915_P001	Maize	mitochondrion	26.24	22.16
Zm00001d002789_P001	Maize	plastid	26.0	21.44
Zm00001d009122_P001	Maize	mitochondrion	24.59	20.19
Zm00001d052030_P001	Maize	plastid	25.06	20.19
Zm00001d032543_P001	Maize	mitochondrion	24.11	19.73
Zm00001d013923_P001	Maize	mitochondrion	22.93	19.4
Zm00001d011182_P001	Maize	endoplasmic reticulum	20.33	17.48
Zm00001d045492_P004	Maize	cytosol	23.4	16.61
Zm00001d024521_P001	Maize	mitochondrion	19.86	16.34
Zm00001d008224_P002	Maize	mitochondrion	21.04	14.31
Zm00001d040475_P001	Maize	mitochondrion	20.57	14.19
Zm00001d019185_P001	Maize	cytosol	18.68	7.62

Protein Annotations

EnsemblPlants:Zm00001d003500_P001	EnsemblPlants:Zm00001d003500_T001	EnsemblPlantsGene:Zm00001d003500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:ONM17055.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000220FA10	UniProt:A0A1D6E9I2	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr2:-:46120248..46122764

Molecular Weight (calculated)

46762.4 Da

IEP (calculated)

7.607

GRAVY (calculated)

-0.321

Length

423 amino acids

Sequence
(BLAST)

001: MAAVLTRAGG RSKRSVSGFH LRSVLAGHGT FSSEAASTAV GDRVVAATGE HDGDDLRSRI FRLGLAKRSA TAALEKWSSE GRDAPTAELR RIARDLTRVR
101: RYKHALEVAD WMKTHHESDL SENDYGMRID LITKVFGASA AEDFFEKLPP GAKSLEAYTA LLHSYGRSKM TDRAERLFER MKDASLPMDA LVYNEMMTLY
201: ISVGELGKVE AVAEELKRQN VSPDLFTYNL RASAAAASMD LEGFRAVLDE MSRDPKSSTE GGWALYRDLA SVYVDAGQLL GSVNSPPVEA GEARISQREW
301: ITYDFLVILH AGLGRPERIR DIWRSMVATS QSQSQQQQRM TSRNYVCVVS SYLACGRLED AGEVVDQWQR SKAPEFDVSA CNRLLDALLR AGLADAAGRF
401: RELMLQKRCI LTSSSSSRAA VVE

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.