Factsheet for Zm00001d052030_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07683	Sorghum	mitochondrion	89.14	88.8
Os02t0796400-00	Rice	mitochondrion	72.95	74.08
TraesCS6D01G341400.1	Wheat	mitochondrion	70.86	71.54
TraesCS6A01G358600.1	Wheat	mitochondrion	69.52	70.6
TraesCS6B01G391300.1	Wheat	mitochondrion	68.95	70.16
HORVU6Hr1G085430.2	Barley	mitochondrion	70.67	70.13
Zm00001d011182_P001	Maize	endoplasmic reticulum	63.81	68.09
GSMUA_Achr7P12830_001	Banana	mitochondrion	50.67	48.9
VIT_18s0001g07000.t01	Wine grape	mitochondrion	44.57	46.61
KRH52991	Soybean	mitochondrion	42.67	45.16
CDX99984	Canola	mitochondrion	40.19	44.14
CDY19721	Canola	mitochondrion	40.0	44.03
Bra036629.1-P	Field mustard	mitochondrion	40.0	44.03
PGSC0003DMT400004477	Potato	plastid	39.62	43.24
CDY25035	Canola	mitochondrion, plastid	40.0	42.86
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	39.62	42.36
Solyc01g081320.2.1	Tomato	plastid	41.33	41.89
Bra020588.1-P	Field mustard	mitochondrion	38.86	41.55
KRH62276	Soybean	mitochondrion	43.81	40.0
CDY05574	Canola	mitochondrion	39.24	39.31
Zm00001d023915_P001	Maize	mitochondrion	28.38	29.74
Zm00001d013923_P001	Maize	mitochondrion	25.33	26.6
Zm00001d002789_P001	Maize	plastid	25.71	26.32
Zm00001d032543_P001	Maize	mitochondrion	25.33	25.73
Zm00001d003500_P001	Maize	mitochondrion	20.19	25.06
Zm00001d009122_P001	Maize	mitochondrion	24.0	24.47
Zm00001d045492_P004	Maize	cytosol	24.76	21.81
Zm00001d024521_P001	Maize	mitochondrion	19.81	20.23
Zm00001d040475_P001	Maize	mitochondrion	21.33	18.27
Zm00001d008224_P002	Maize	mitochondrion	21.33	18.01
Zm00001d019185_P001	Maize	cytosol	19.24	9.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100272948	MapMan:35.1	ProteinID:AQK55846.1	UniProt:B4FRV9	EMBL:BT039847
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B79B4	EnsemblPlantsGene:Zm00001d052030	EnsemblPlants:Zm00001d052030_P001	EnsemblPlants:Zm00001d052030_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr4:+:176898108..176900484

Molecular Weight (calculated)

59137.5 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.217

Length

525 amino acids

Sequence
(BLAST)

001: MAAAARSRLA GLRLDLASRT APNPKPLLSS AFSSSTISAP PAAGRVREDE SGLLSRRLLR LRFRSPAGTA AAAVERWAQD RVHVSQPELR RAIGMLRRER
101: RYEQALEIFS WMESCSSLRL SSWDHAARLD LIAKAYSTSQ AEEYYNKLQS PATRQAASFP LLHCYVMERD VQKAETFMAQ LQSHGLPVDP HSFNEIMKLY
201: VATCQYEKVL SVIDLMKRNN IHRNVLSYNL WMNACAEVSG VDSVQSVFQV MLNDETVKVG WSTYCTLANI FRKNGLNNEA QACLVKAEAK LSPAGRLGYS
301: FVMTCYAALN DSDGVMRMWE ASKSVPGRIP TAYYMAAMSC SIKVGDISQA ECIFGKWEAG CRKHDVRVSN VLLGAYVRNR WIEKAERLHL HMLEKGACPN
401: YKTWEILMEG YVQSRQMDKA VGCMKKGLSL LKSCHWRPPV ELMEAIGKHF EEQGSADDAY RYIKVLQRFN LTSLPLYKSL IRAYINADVV PPNVLEMIAK
501: DQIDMDEEMD RLIIIAGKID ITCNG

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.