CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62276	Soybean	mitochondrion	89.11	76.87
VIT_18s0001g07000.t01	Wine grape	mitochondrion	57.66	56.97
Bra036629.1-P	Field mustard	mitochondrion	52.62	54.72
CDY19721	Canola	mitochondrion	52.62	54.72
CDX99984	Canola	mitochondrion	51.61	53.56
CDY25035	Canola	mitochondrion, plastid	51.81	52.45
Bra020588.1-P	Field mustard	mitochondrion	51.81	52.34
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	51.01	51.53
PGSC0003DMT400004477	Potato	plastid	47.58	49.06
CDY05574	Canola	mitochondrion	51.41	48.66
Solyc01g081320.2.1	Tomato	plastid	49.6	47.49
TraesCS6B01G391300.1	Wheat	mitochondrion	46.57	44.77
Os02t0796400-00	Rice	mitochondrion	46.57	44.68
TraesCS6D01G341400.1	Wheat	mitochondrion	46.57	44.42
GSMUA_Achr7P12830_001	Banana	mitochondrion	48.39	44.12
TraesCS6A01G358600.1	Wheat	mitochondrion	45.77	43.91
HORVU6Hr1G085430.2	Barley	mitochondrion	46.77	43.86
EES07683	Sorghum	mitochondrion	45.97	43.26
Zm00001d052030_P001	Maize	plastid	45.16	42.67
Zm00001d011182_P001	Maize	endoplasmic reticulum	33.87	34.15
KRH55328	Soybean	plastid	29.44	29.67
KRH10858	Soybean	mitochondrion	26.81	27.37
KRH22399	Soybean	cytosol	26.01	27.1
KRH26940	Soybean	cytosol	27.02	27.02
KRH45616	Soybean	nucleus	26.21	26.53
KRG99413	Soybean	cytosol, mitochondrion	18.55	26.21
KRH69203	Soybean	cytosol	20.16	25.71
KRH43872	Soybean	mitochondrion	20.36	25.57
KRH48889	Soybean	plastid	28.02	25.46
KRH10583	Soybean	mitochondrion	20.16	25.06
KRH31780	Soybean	mitochondrion	23.59	24.58
KRH66454	Soybean	plastid	27.42	24.5
KRH66764	Soybean	cytosol	18.35	21.93
KRH10262	Soybean	mitochondrion	20.97	20.51
KRH23068	Soybean	mitochondrion	19.96	19.53
KRH31614	Soybean	mitochondrion	20.97	17.33
KRH69049	Soybean	mitochondrion	20.97	17.08
KRG95098	Soybean	mitochondrion	19.96	16.23

Protein Annotations

EMBL:ACUP02003444	EnsemblPlants:KRH52991	EnsemblPlantsGene:GLYMA_06G099100	EntrezGene:100803685	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:KRH52990.1
ProteinID:KRH52991	ProteinID:KRH52991.1	UniParc:UPI000233A783	UniProt:A0A0R0JEM3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:7880892..7884651

Molecular Weight (calculated)

56828.8 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.125

Length

496 amino acids

Sequence
(BLAST)

001: MASRFLSAGI RRFVFGARTL CSSEASRASA FPMPFARKFK FSKQSPLPAL QNWVDQGNDV SPFQLRSIAR TLVKSKRYHH ALEVFEWIKN QKNFHMIPAD
101: HAMKLELIIE NHGLMEAEEY FMNLPDSAAK KAACLILLRG YVRDRDTSKA ETFMLKLYEL GLVVSPHPFN EMMKLYLVTC EYRKVPLVIQ QMKRNKIPCN
201: VLSYNLWMNA CSEEEGYVVA AVETVFRQML NDRNVEVGWG SLATLANAYK KAGQSKKAIL VLKDAEKKLS TCNRLGHFFL ITLYASLKDK EGVLRLWEAS
301: KAVRGRISCA NYICILTCLV KLGDIVQAKR IFLEWESNCQ KYDIRVSNVL LGAYVRNGLM EEAESLHLHT LQKGGCPNYK TLEILMEGYV NWQKMDEAII
401: TMKRALAMMK DCHWRPPHGI VLAIAEYLEK DGNLEYADKY ITDIHNLGLV SLSLYKVLLR MHLSANKPPF HILKMMDEDK VEIDNETLSI LKAFTE

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.