CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31614	Soybean	mitochondrion	88.18	89.5
KRH66764	Soybean	cytosol	46.31	67.95
KRG95098	Soybean	mitochondrion	60.92	60.82
VIT_08s0007g05090.t01	Wine grape	mitochondrion	60.1	58.65
PGSC0003DMT400022632	Potato	mitochondrion	57.14	55.77
Solyc12g020050.1.1	Tomato	plastid	56.65	55.29
AT1G80270.2	Thale cress	mitochondrion	53.37	54.53
GSMUA_Achr5P27560_001	Banana	cytosol	45.81	54.39
GSMUA_Achr8P21680_001	Banana	mitochondrion	55.17	54.37
CDY57695	Canola	mitochondrion	53.69	54.23
AT1G15480.1	Thale cress	mitochondrion	50.74	52.02
CDY39654	Canola	mitochondrion	51.07	51.75
PGSC0003DMT400021596	Potato	mitochondrion	51.56	51.22
Os01t0280400-00	Rice	mitochondrion	49.1	48.94
Os12t0170100-01	Rice	mitochondrion	48.93	48.77
TraesCS3D01G195000.1	Wheat	mitochondrion	47.62	47.31
HORVU3Hr1G040710.1	Barley	mitochondrion	47.45	47.22
TraesCS3B01G220600.2	Wheat	mitochondrion	47.29	46.98
TraesCS3A01G191200.1	Wheat	mitochondrion	47.13	46.9
GSMUA_Achr11P...	Banana	mitochondrion	47.95	46.5
AT3G15590.2	Thale cress	cytosol, mitochondrion	46.47	46.39
Zm00001d008224_P002	Maize	mitochondrion	47.29	46.3
Bra027226.1-P	Field mustard	plastid	45.48	46.01
OQU86720	Sorghum	mitochondrion	46.14	45.84
Bra003559.1-P	Field mustard	cytosol	53.37	45.65
Zm00001d040475_P001	Maize	mitochondrion	45.81	45.51
CDY30088	Canola	plastid	44.17	43.6
CDX97686	Canola	plastid	44.34	43.55
Bra026128.1-P	Field mustard	cytosol	50.57	33.08
CDX79395	Canola	cytosol	53.53	31.8
KRH45616	Soybean	nucleus	20.2	25.1
KRH10858	Soybean	mitochondrion	19.21	24.07
KRH69203	Soybean	cytosol	15.27	23.91
KRH31780	Soybean	mitochondrion	18.55	23.74
KRH10262	Soybean	mitochondrion	19.7	23.67
KRH22399	Soybean	cytosol	17.73	22.69
KRH26940	Soybean	cytosol	18.39	22.58
KRH48889	Soybean	plastid	20.03	22.34
KRH23068	Soybean	mitochondrion	18.55	22.29
KRH10583	Soybean	mitochondrion	14.45	22.06
KRH43872	Soybean	mitochondrion	14.29	22.03
KRG99413	Soybean	cytosol, mitochondrion	12.48	21.65
KRH66454	Soybean	plastid	19.38	21.26
KRH52991	Soybean	mitochondrion	17.08	20.97
KRH55328	Soybean	plastid	16.75	20.73
KRH62276	Soybean	mitochondrion	18.23	19.3

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100805354	MapMan:16.12.5.4.19	EMBL:ACUP02000687	EnsemblPlantsGene:GLYMA_02G000600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	UniProt:I1JB37	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlants:KRH69049	ProteinID:KRH69049	ProteinID:KRH69049.1	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1592	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002337B3C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:66163..71743

Molecular Weight (calculated)

68634.6 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.397

Length

609 amino acids

Sequence
(BLAST)

001: MWTLRRASLR LSTSQGLNAG ATRASAVKLV PITVEENEAG IPQSRQITHS RFLSADTFCR TGRVSLKFAV GTRELSSQAG ASSTKVDDDD LEGGLSELEI
101: QGSNDESDAD LSDEDEDGGK PVDEMDLSDA DPTKKKSQGR RTQSELFKAI ANAPGLSVDS ALNKWVEHGK ELSRKEILLA VRELRRRKMY GRAFQLFQWL
201: ESNKKLEFME SDYASQLDLI AKLRGLPKAE KYIESVPESF RGELLYRTLL ANCASQNNLI ATEKIFNKMK DLDLPLTAFA CNQLLLLYKK LDKKKIADVL
301: LLMEKENVKP SLFTYRILID SKGQSNDIAG MEQVFETMKE EGFEPDIQIQ ALLARHYTSS GLKEKAEAML KEMEGENLKE NQWVCATLLR LYANLGKADE
401: VERIWKVCES KPRVEDCLAA VEAWGKLNKI EEAEAVFEMV SKKWKLNSKN YSVLLKIYAN NKMLTKGKEL VKLMADSGVR IGPLTWDALV KLYIQAGEVE
501: KADSILHKAI QQNQLQPMFT TYLAILEQYA KRGDVHNSEK IFLKMRQAGY TSRISQFQVL IQAYVNAKVP AYGIRERIKA DNLFPNKTLA NQLALVDAFR
601: KNAVSDLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.