Factsheet for GSMUA_Achr11P25170_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27560_001	Banana	cytosol	50.16	61.4
GSMUA_Achr8P21680_001	Banana	mitochondrion	54.62	55.5
KRH66764	Soybean	cytosol	33.92	51.33
TraesCS3A01G191200.1	Wheat	mitochondrion	49.52	50.82
HORVU3Hr1G040710.1	Barley	mitochondrion	49.52	50.82
Os01t0280400-00	Rice	mitochondrion	49.2	50.57
TraesCS3D01G195000.1	Wheat	mitochondrion	49.36	50.57
TraesCS3B01G220600.2	Wheat	mitochondrion	49.36	50.57
Os12t0170100-01	Rice	mitochondrion	48.57	49.92
OQU86720	Sorghum	mitochondrion	47.61	48.78
VIT_08s0007g05090.t01	Wine grape	mitochondrion	47.93	48.24
KRH69049	Soybean	mitochondrion	46.5	47.95
Zm00001d040475_P001	Maize	mitochondrion	46.5	47.63
KRH31614	Soybean	mitochondrion	44.9	47.0
AT1G80270.2	Thale cress	mitochondrion	44.59	46.98
Zm00001d008224_P002	Maize	mitochondrion	46.34	46.78
CDY57695	Canola	mitochondrion	44.75	46.6
Solyc12g020050.1.1	Tomato	plastid	45.7	45.99
PGSC0003DMT400022632	Potato	mitochondrion	45.7	45.99
KRG95098	Soybean	mitochondrion	44.11	45.41
CDY39654	Canola	mitochondrion	42.2	44.09
AT1G15480.1	Thale cress	mitochondrion	41.56	43.94
AT3G15590.2	Thale cress	cytosol, mitochondrion	39.97	41.15
PGSC0003DMT400021596	Potato	mitochondrion	39.81	40.78
Bra003559.1-P	Field mustard	cytosol	45.06	39.75
Bra027226.1-P	Field mustard	plastid	37.58	39.2
CDY30088	Canola	plastid	37.26	37.93
CDX97686	Canola	plastid	37.26	37.74
Bra026128.1-P	Field mustard	cytosol	42.68	28.79
CDX79395	Canola	cytosol	44.43	27.22
GSMUA_Achr1P17120_001	Banana	mitochondrion	21.02	25.38
GSMUA_AchrUn_...	Banana	cytosol	13.69	23.06
GSMUA_Achr1P02980_001	Banana	mitochondrion	18.95	22.45
GSMUA_Achr1P16170_001	Banana	cytosol	16.72	21.56
GSMUA_Achr10P...	Banana	cytosol	14.81	21.09
GSMUA_Achr11P...	Banana	mitochondrion	17.04	20.62
GSMUA_Achr5P20750_001	Banana	mitochondrion	17.83	20.51
GSMUA_Achr9P23230_001	Banana	mitochondrion	16.88	20.31
GSMUA_Achr7P12830_001	Banana	mitochondrion	17.52	20.22

Protein Annotations

EnsemblPlants:GSMUA_Achr11P25170_001	EnsemblPlants:GSMUA_Achr11T25170_001	EnsemblPlantsGene:GSMUA_Achr11G25170_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF26	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI00029551DC	UniProt:M0RV97	MapMan:16.12.5.4.19	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g80270, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G25170_001]

Coordinates

chr11:+:24388299..24395151

Molecular Weight (calculated)

71350.2 Da

IEP (calculated)

6.711

GRAVY (calculated)

-0.317

Length

628 amino acids

Sequence
(BLAST)

001: MGGGVAIWAL RRAAARSMRG QSHDIMLAHV CCMDSKLSRN SLVHEKGHCD ISKGCILLKP YSSGCSYSVM SFLWCRKLSS DVGARQGQKD DDLEDGFSDK
101: ELPPEADAMV ELEENENDEE LVSEGEISEE DTKITANDSL GLLDCVSDFP MKKRRRGKRA QSPLFKIIMG APSDSFNSTL DKWVKDGNRL GRDEISFTML
201: NLRRYRLYMK ALQFLKWLEA NKCIEFLEHD YASHLDLIAK VLGLQKAEDY LEKVPESLRG EVIYRTLLAN CVATNDLQKS EAVFNKIKDL GLPITTFSCN
301: QLLLLYERID FKKIANVLSL MERENVKPSP FTYRLLIDMK GRAKDVLGME KIIDMMKAQG VEPNLVIQAM VAKYYIFAGL KEKAEAILRE IEGGDIEENH
401: DACMALLPLY AALGKADEVG RIWKICKSDP LLDECLSAIK AWGILGQTEN AEEVFENMLK RWKTVPSKYY NELLKAFVNN KLLSKGEEFA RRMSDNGYFI
501: DRTNLDALVK LYVDVGEVEK ADSILYKAFK YNNTRPLYSS YVVVLDKYSE RGDIHNAEKI FQQMRQFGYV DRLKPYLSLL QTYINAKSPA YGFRERMRAD
601: NVLSNKVVEA KLAAADPFRN PQLSGLFG

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.