Factsheet for GSMUA_Achr1P02980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0598500-01	Rice	mitochondrion	55.09	57.71
TraesCS1D01G166800.1	Wheat	mitochondrion	53.96	55.97
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	53.21	55.95
TraesCS1B01G188100.1	Wheat	mitochondrion	53.77	55.77
VIT_10s0597g00040.t01	Wine grape	extracellular	53.21	55.73
EER91421	Sorghum	mitochondrion	52.08	55.65
TraesCS1A01G168800.1	Wheat	mitochondrion	53.58	55.58
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	54.34	55.49
Zm00001d013923_P001	Maize	mitochondrion	52.08	55.2
KRH10858	Soybean	mitochondrion	50.38	54.94
EER90330	Sorghum	mitochondrion	50.75	53.59
EER90329	Sorghum	mitochondrion	49.06	51.69
PGSC0003DMT400032340	Potato	mitochondrion	45.47	49.79
Bra038762.1-P	Field mustard	mitochondrion	45.66	49.59
CDX98698	Canola	mitochondrion	45.47	49.39
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	45.66	49.29
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	45.09	48.68
AT4G21705.1	Thale cress	mitochondrion	45.09	48.58
KRH55328	Soybean	plastid	44.53	47.97
Solyc07g063220.2.1	Tomato	plastid	46.98	44.86
CDX94049	Canola	cytosol	45.85	34.62
GSMUA_AchrUn_...	Banana	cytosol	23.58	33.51
GSMUA_Achr1P17120_001	Banana	mitochondrion	32.45	33.08
GSMUA_Achr1P16170_001	Banana	cytosol	30.0	32.65
GSMUA_Achr5P20750_001	Banana	mitochondrion	31.32	30.4
GSMUA_Achr11P...	Banana	mitochondrion	29.62	30.25
GSMUA_Achr7P12830_001	Banana	mitochondrion	29.81	29.04
GSMUA_Achr10P...	Banana	cytosol	22.64	27.21
GSMUA_Achr5P27560_001	Banana	cytosol	22.83	23.59
GSMUA_Achr9P23230_001	Banana	mitochondrion	20.57	20.88
GSMUA_Achr8P21680_001	Banana	mitochondrion	23.96	20.55
GSMUA_Achr11P...	Banana	mitochondrion	22.45	18.95

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02980_001	EnsemblPlants:GSMUA_Achr1T02980_001	EnsemblPlantsGene:GSMUA_Achr1G02980_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1655	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI00029616B5	UniProt:M0RWK6	MapMan:35.1	:	:	:

Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G02980_001]

Coordinates

chr1:-:2405092..2409137

Molecular Weight (calculated)

60558.7 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.388

Length

530 amino acids

Sequence
(BLAST)

001: MGSTVFSVAR LLRRALQIRL RCSGSPLAAG SSRHFCTARA PRTTLQSMIW PLGLPSVSLE PELDRWVARG HRVRLVELQH VIRELRKRRR YKQALEVSEW
101: MKGKQKIQFM SSDHAVHLDL IGQVHGLSSA ESYFNNMREN DKNEKTYGAL LNCYVRERLV EKSLSHIQKM KELGLVSSPL PYNDIMCLYT NTGQHEKVPS
201: VLEDMKTNGV LPDNFSYRIC INSYGTMSDI NGMEMILEEM EHQPQIVVDW NTYSVVANIY IKASITDKAS SALKKAEEKL DKRNALGYNH LISLYSQLGN
301: KSEMQRLWEL QKVNCKKFIN KDYTTMLGGL VKLGEVEEAE VLMKEWESSG NALDWRVPNV LLVGYKKMGL LEKAEAMLDD FLKKGKTPAA SSWGIVATGY
401: AEKDMMDKAY ELMKNALCVY ISSAGWEPNP TIVKSILHYL GDNSQSKDVE TFIQLLKFAM PIDRDMYHTL IKTYIREGKE VSELMQRMKS DGIKENEETK
501: KILDKCMMTV LGVGQFTIDV DIYREQKKGK

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.