Factsheet for Zm00001d013923_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91421	Sorghum	mitochondrion	86.2	86.9
Os07t0598500-01	Rice	mitochondrion	75.6	74.7
TraesCS1B01G188100.1	Wheat	mitochondrion	74.2	72.6
TraesCS1A01G168800.1	Wheat	mitochondrion	74.0	72.41
TraesCS1D01G166800.1	Wheat	mitochondrion	73.6	72.02
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	73.8	71.1
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.2	52.08
KRH10858	Soybean	mitochondrion	45.4	46.71
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	47.0	46.63
PGSC0003DMT400032340	Potato	mitochondrion	45.0	46.49
VIT_10s0597g00040.t01	Wine grape	extracellular	46.8	46.25
KRH55328	Soybean	plastid	42.2	42.89
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	41.0	41.75
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	41.0	41.75
AT4G21705.1	Thale cress	mitochondrion	41.0	41.67
CDX98698	Canola	mitochondrion	40.6	41.6
Bra038762.1-P	Field mustard	mitochondrion	40.2	41.19
Solyc07g063220.2.1	Tomato	plastid	44.2	39.82
Zm00001d032543_P001	Maize	mitochondrion	30.2	29.21
CDX94049	Canola	cytosol	40.4	28.77
Zm00001d002789_P001	Maize	plastid	27.8	27.1
Zm00001d009122_P001	Maize	mitochondrion	27.0	26.21
Zm00001d023915_P001	Maize	mitochondrion	25.8	25.75
Zm00001d052030_P001	Maize	plastid	26.6	25.33
Zm00001d045492_P004	Maize	cytosol	28.2	23.66
Zm00001d003500_P001	Maize	mitochondrion	19.4	22.93
Zm00001d011182_P001	Maize	endoplasmic reticulum	21.4	21.75
Zm00001d040475_P001	Maize	mitochondrion	22.8	18.6
Zm00001d008224_P002	Maize	mitochondrion	23.0	18.49
Zm00001d024521_P001	Maize	mitochondrion	18.0	17.51
Zm00001d019185_P001	Maize	cytosol	22.2	10.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100278278	MapMan:35.1	ProteinID:AQK64820.1	EMBL:BT064315	UniProt:C0P7P6
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001949067	EnsemblPlantsGene:Zm00001d013923	EnsemblPlants:Zm00001d013923_P001	EnsemblPlants:Zm00001d013923_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr5:+:24943241..24945641

Molecular Weight (calculated)

56614.1 Da

IEP (calculated)

8.721

GRAVY (calculated)

-0.425

Length

500 amino acids

Sequence
(BLAST)

001: MASLFAPARR LLSLGRRRHR RGGQLPVPPS SRSNSAEERP PPARSLSLDS TLFPLGHPST LLVPEIELWA ARPRNLLRAV ELQRIVKELR KRRRHRQALE
101: VSEWMSLKGH VKFLPKDHAI HLDLIGQIHG VEAAETYFNN LSDKDKTEKP YGALLNCYTR ELLVDKALAH FRNMKELGFV FSTLPYNDLM GLYTRIGQHE
201: RVPSVMAEMK SNGIVPDNFS YRICINSYGT RADFFGLENT LEEMECEPQI VVDWNTYAVV ASNYIKGDLR EKAYSALSKA EAKLDKQDPD AYRHLISLYG
301: NLGDKSEAKR LWAVQMSNCK RYINRDYMNM LSVLVKLDEI TEAEDLLKEW ESSQNSFDFR VPNVLLTGYR QKALLDKAEM LLDGFLKKGK TPPSTSWGIV
401: AIGYAEKGDV AKAYEMTKNA LSVHAPNTGW IPRPSMLEMI LKYLGDEGEV KDVEAFVSLL KAAVPVDSDM TEALSRARAR AREERKAEEA TEAPRGDVIA

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.