Factsheet for PGSC0003DMT400032340

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063220.2.1	Tomato	plastid	96.9	84.5
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	57.85	55.56
KRH55328	Soybean	plastid	50.83	50.0
Os07t0598500-01	Rice	mitochondrion	47.93	45.85
GSMUA_Achr1P02980_001	Banana	mitochondrion	49.79	45.47
EER91421	Sorghum	mitochondrion	46.28	45.16
Zm00001d013923_P001	Maize	mitochondrion	46.49	45.0
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	47.11	43.93
TraesCS1D01G166800.1	Wheat	mitochondrion	46.28	43.84
TraesCS1B01G188100.1	Wheat	mitochondrion	46.07	43.64
TraesCS1A01G168800.1	Wheat	mitochondrion	46.07	43.64
EER90330	Sorghum	mitochondrion	44.63	43.03
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	43.59	42.97
EER90329	Sorghum	mitochondrion	44.21	42.54
PGSC0003DMT400031020	Potato	cytosol	8.26	33.61
PGSC0003DMT400047256	Potato	extracellular	21.28	31.89
PGSC0003DMT400023279	Potato	mitochondrion	31.82	31.11
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	30.37	30.75
PGSC0003DMT400058755	Potato	cytosol	25.0	30.63
PGSC0003DMT400004477	Potato	plastid	30.17	30.35
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	30.58	29.72
PGSC0003DMT400080049	Potato	cytosol, plastid	32.44	28.81
PGSC0003DMT400092266	Potato	mitochondrion	10.95	28.65
PGSC0003DMT400077284	Potato	mitochondrion	29.55	27.29
PGSC0003DMT400002590	Potato	cytosol	27.48	27.03
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	28.72	26.53
PGSC0003DMT400011461	Potato	mitochondrion	21.69	26.25
PGSC0003DMT400007271	Potato	mitochondrion	25.21	25.26
PGSC0003DMT400069375	Potato	cytosol	20.04	20.46
PGSC0003DMT400031016	Potato	cytosol	12.6	20.07
PGSC0003DMT400022632	Potato	mitochondrion	22.93	17.79
PGSC0003DMT400021596	Potato	mitochondrion	21.9	17.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400032340	EnsemblPlantsGene:PGSC0003DMG400012422	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400012422	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000295D1A7	UniProt:M1AX92	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012422]

Coordinates

chr7:+:53278575..53281946

Molecular Weight (calculated)

55670.8 Da

IEP (calculated)

7.217

GRAVY (calculated)

-0.377

Length

484 amino acids

Sequence
(BLAST)

001: MNFATLRRSI SYNLLQRAFP IRSYCTVYCS NSKRNNLFSR ISPVRHADLI IPVLDEWVDE GRKVTSFELQ RIVRDLRSRK RFSQALQVSE WMSVRGLCPF
101: KSGDCAVHLD LIGVVHGWEA AECYFNNLTD EQKNDKTSGA LFNCYIRERL VEKSLAHFQK MKELGYAHCT LVYNNLMCLY RSTGQLEQVS DVLSEMKENG
201: VTPNNFSYRI CINCCGERAD FSGMEKLLEE MESQPFISVD WITYSMMANV YIKAKFKEKA LIFLKKLEDR LHKDPIGYNH LISHYGNLGN KEEMLRLWGV
301: HKVVCKKQIN RDYITMLGSL VKLGELETAE TVLKEWESSC RTYDFRVPNI LLIGYCQSDL VDKAETMLQD IVKKGQTPIP NSWAIIAAGY LNMNNMEKAF
401: ECMKEAIAVR GQNPAWRPKP HLVSSISKWL GDQQDAREVE AFLSSLKTVV TGNKDVHDAT RNTEASGIEE ENENEEILSY EQSK

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.