Factsheet for PGSC0003DMT400047255

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	92.97	93.91
PGSC0003DMT400047256	Potato	extracellular	57.43	88.54
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	43.57	43.49
CDY35213	Canola	cytosol	3.41	41.46
KRH22399	Soybean	cytosol	37.75	39.5
AT2G20710.1	Thale cress	mitochondrion	37.95	38.57
KRH26940	Soybean	cytosol	38.15	38.31
CDY03299	Canola	mitochondrion	36.14	38.05
CDY39781	Canola	mitochondrion	36.35	37.87
Bra036673.1-P	Field mustard	mitochondrion	36.14	37.66
PGSC0003DMT400058755	Potato	cytosol	28.51	35.95
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	32.53	33.89
PGSC0003DMT400031020	Potato	cytosol	7.63	31.93
PGSC0003DMT400092266	Potato	mitochondrion	11.85	31.89
CDY27645	Canola	mitochondrion	16.27	31.27
PGSC0003DMT400032340	Potato	mitochondrion	29.72	30.58
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	29.72	30.14
CDY65573	Canola	mitochondrion	22.29	30.0
Os10t0501300-01	Rice	mitochondrion	30.72	29.82
Bra011054.1-P	Field mustard	mitochondrion	20.28	29.62
GSMUA_Achr5P20750_001	Banana	mitochondrion	32.33	29.49
TraesCS1B01G188200.1	Wheat	mitochondrion	29.12	29.47
OQU91552	Sorghum	mitochondrion	29.92	29.22
TraesCS1D01G166700.1	Wheat	mitochondrion	28.71	28.89
CDY35212	Canola	mitochondrion	16.06	28.47
Os10t0501000-01	Rice	cytosol	25.5	28.16
AT1G28020.1	Thale cress	cytosol, plastid	27.71	27.94
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	28.92	27.48
PGSC0003DMT400077284	Potato	mitochondrion	28.71	27.29
Zm00001d032543_P001	Maize	mitochondrion	28.11	27.08
PGSC0003DMT400002590	Potato	cytosol	26.71	27.03
PGSC0003DMT400080049	Potato	cytosol, plastid	29.32	26.79
CDY71968	Canola	plastid	15.66	26.71
PGSC0003DMT400004477	Potato	plastid	25.7	26.61
PGSC0003DMT400011461	Potato	mitochondrion	21.29	26.5
PGSC0003DMT400023279	Potato	mitochondrion	26.31	26.46
Bra032862.1-P	Field mustard	mitochondrion	19.88	26.12
AT1G43010.1	Thale cress	mitochondrion	13.45	26.07
PGSC0003DMT400007271	Potato	mitochondrion	25.1	25.88
TraesCS1A01G168700.1	Wheat	mitochondrion	29.32	25.0
Os10t0501200-00	Rice	mitochondrion	31.33	24.92
AT1G28000.1	Thale cress	mitochondrion	19.28	24.74
Bra036496.1-P	Field mustard	plastid	23.9	24.54
CDY05786	Canola	plastid	23.9	24.54
CDY31943	Canola	plastid	23.9	24.54
Bra032863.1-P	Field mustard	mitochondrion	19.48	24.25
CDY27647	Canola	mitochondrion	19.68	24.08
CDY48421	Canola	mitochondrion	19.48	23.49
AT3G11380.1	Thale cress	mitochondrion	24.7	22.74
AT2G20720.1	Thale cress	cytosol	13.25	22.07
PGSC0003DMT400031016	Potato	cytosol	13.45	22.04
CDY00734	Canola	mitochondrion	7.43	20.9
AT3G11350.1	Thale cress	mitochondrion	15.06	20.89
PGSC0003DMT400069375	Potato	cytosol	18.27	19.2
PGSC0003DMT400022632	Potato	mitochondrion	22.89	18.27
Bra032865.1-P	Field mustard	cytosol	20.48	17.77
Bra001400.1-P	Field mustard	mitochondrion, plastid	26.51	17.62
CDY53325	Canola	mitochondrion	24.7	17.62
PGSC0003DMT400021596	Potato	mitochondrion	21.69	17.62
CDY53324	Canola	mitochondrion, plastid	25.3	17.24
CDX73880	Canola	mitochondrion	15.86	15.77
CDY66759	Canola	cytosol	20.48	13.65
Bra032866.1-P	Field mustard	mitochondrion	16.06	12.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400047255	EnsemblPlantsGene:PGSC0003DMG402018347	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG402018347	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000294ECA0	UniProt:M1BKE0	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402018347]

Coordinates

chr7:+:49068937..49073476

Molecular Weight (calculated)

57221.0 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.406

Length

498 amino acids

Sequence
(BLAST)

001: MVKLVQQSWW KFSTCFLRVS SSYSTNTETL ASLFLANKDE QCLNPLTSSP KNALYSRLLY LTRSKESVIS VLDKWVTEQN PIKYEDLLII VRQFRAYRRY
101: NHALQIFEWI KKSKDFDISP RDFAVELDLV SKAHGLEAAE TYFTSIPDDL RTYQVYGALL NCYADAKVLK KAEDTMQKLK ELAYAGTVAY NVMMTLYAKL
201: GYLEKLQSLM LEMEDKGISG DAISYNILLN AYASVPDVTE MEKVLMKMEA DPLLIDWSPY TVVAKGYLNA GDIEKANESL KKCENRLKGK REKLGIDMLI
301: TLYTSMGKKD DVYRIWNKYN KKVKHHNSSY HCMIRGLEKL DDLDGAEKIF AEWETNRVHF DIRIPNLLIS AYCKKGHMEK AISIIEQLEE SGKHPNGSSW
401: NRLALGYCVQ NDMEKAVETM KKAILASKPG WKPHFHSLAS CVKYLQSKGD TQGEEELKDL LRVRGLCSKE FERGLDKYIE IGNRKSEALN ETDIEEIC

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.