Factsheet for PGSC0003DMT400031016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	77.96	45.23
PGSC0003DMT400077284	Potato	mitochondrion	75.66	43.89
VIT_16s0039g02800.t01	Wine grape	cytosol	54.28	33.13
PGSC0003DMT400031020	Potato	cytosol	10.86	27.73
Bra018528.1-P	Field mustard	mitochondrion	46.71	27.63
CDX97288	Canola	mitochondrion	46.71	27.63
GSMUA_Achr1P17120_001	Banana	mitochondrion	46.71	27.31
CDX91277	Canola	mitochondrion	46.05	26.98
AT4G02820.1	Thale cress	mitochondrion	46.71	26.69
Os12t0527900-01	Rice	mitochondrion	42.11	24.9
HORVU5Hr1G027150.1	Barley	mitochondrion	41.12	24.32
TraesCS5D01G112000.1	Wheat	mitochondrion	40.79	24.31
TraesCS5B01G104900.1	Wheat	mitochondrion	40.79	24.31
TraesCS5A01G099700.1	Wheat	mitochondrion	40.46	24.12
Zm00001d023915_P001	Maize	mitochondrion	38.82	23.55
OQU79216	Sorghum	cytosol	39.47	21.86
PGSC0003DMT400047256	Potato	extracellular	21.05	19.81
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	26.97	16.7
PGSC0003DMT400002590	Potato	cytosol	25.33	15.65
PGSC0003DMT400004477	Potato	plastid	24.34	15.38
PGSC0003DMT400058755	Potato	cytosol	18.75	14.43
PGSC0003DMT400080049	Potato	cytosol, plastid	25.33	14.13
PGSC0003DMT400023279	Potato	mitochondrion	22.04	13.54
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	22.04	13.45
PGSC0003DMT400032340	Potato	mitochondrion	20.07	12.6
PGSC0003DMT400007271	Potato	mitochondrion	19.41	12.22
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	18.09	11.51
PGSC0003DMT400011461	Potato	mitochondrion	15.13	11.5
PGSC0003DMT400069375	Potato	cytosol	16.78	10.76
PGSC0003DMT400022632	Potato	mitochondrion	21.38	10.42
PGSC0003DMT400021596	Potato	mitochondrion	20.72	10.28
CDY36566	Canola	mitochondrion	19.74	9.98
PGSC0003DMT400092266	Potato	mitochondrion	4.61	7.57
CDY36565	Canola	cytosol	1.32	1.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400031016	EnsemblPlantsGene:PGSC0003DMG400011884	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	PFAM:PF17177	PFscan:PS51375	PGSC:PGSC0003DMG400011884	SEG:seg
UniParc:UPI000296BF39	UniProt:M1AV37	MapMan:35.1	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011884]

Coordinates

chr1:+:8443679..8449941

Molecular Weight (calculated)

35225.8 Da

IEP (calculated)

9.465

GRAVY (calculated)

-0.475

Length

304 amino acids

Sequence
(BLAST)

001: MVNTRYNGVR PVAHVNAPAE ESAARGRGRG RESPHLQKES LESSSLLECL RSLQDKANST LREMEKRISR KDRTAYASLI NLHANLQNKD EVFRIWKEMK
101: SIFRKVNDTE YSCIILSLLK LDEFGEAMNM YTEWEAVSVT KDTRIANLIL AAYIYKNEME KTVDFHNRMM QKGISPSYTT WELLMRGYLK QKEMDEVLKF
201: FKKTVMSVSK WDSDAKMVRE MLHVIEEQGD IQVAEELLFT LRHAKYVNTE IYNALLRTYV NAGKMLMIVA ERMKKDNVKM DEETQKLIGI TSKMTVTKVP
301: NGVA

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.