Factsheet for PGSC0003DMT400007271

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100580.2.1	Tomato	mitochondrion	94.62	94.81
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	54.04	52.41
PGSC0003DMT400023279	Potato	mitochondrion	37.27	36.36
PGSC0003DMT400031020	Potato	cytosol	8.9	36.13
GSMUA_Achr11P...	Banana	mitochondrion	35.2	32.76
TraesCS2B01G583500.1	Wheat	mitochondrion	31.88	32.08
PGSC0003DMT400002590	Potato	cytosol	32.3	31.71
TraesCS6B01G118900.1	Wheat	cytosol	26.5	30.77
Zm00001d009122_P001	Maize	mitochondrion	32.71	30.68
TraesCS6D01G079300.1	Wheat	mitochondrion	31.88	30.26
TraesCS6A01G091100.1	Wheat	mitochondrion	31.68	30.18
Os01t0301000-01	Rice	mitochondrion	32.3	29.89
TraesCS6B01G119100.1	Wheat	mitochondrion	30.23	29.49
TraesCS6A01G090900.1	Wheat	mitochondrion	29.19	29.44
EES02848	Sorghum	mitochondrion	32.3	29.43
TraesCS6A01G091000.1	Wheat	mitochondrion	30.85	29.22
Os01t0301700-01	Rice	mitochondrion	30.43	29.17
TraesCS6D01G079100.1	Wheat	mitochondrion	28.78	29.02
TraesCS6B01G119000.1	Wheat	mitochondrion	28.78	29.02
TraesCS2B01G584000.2	Wheat	mitochondrion	32.71	28.57
TraesCS6A01G090800.2	Wheat	mitochondrion	28.16	28.22
TraesCS2A01G552100.1	Wheat	mitochondrion	32.09	28.18
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	29.19	28.14
TraesCS2A01G552700.1	Wheat	mitochondrion	31.88	27.95
TraesCS6D01G079200.1	Wheat	plastid	31.26	27.91
TraesCS2D01G553100.1	Wheat	mitochondrion	31.47	27.89
TraesCS2D01G553300.1	Wheat	mitochondrion	32.3	27.86
Os01t0301500-01	Rice	cytosol, mitochondrion	27.54	27.48
HORVU6Hr1G016360.7	Barley	mitochondrion	28.16	27.2
TraesCS6A01G091200.2	Wheat	cytosol	20.5	27.12
HORVU6Hr1G016390.10	Barley	plastid	30.23	26.26
PGSC0003DMT400004477	Potato	plastid	25.67	25.78
PGSC0003DMT400011461	Potato	mitochondrion	21.12	25.5
PGSC0003DMT400047256	Potato	extracellular	16.98	25.39
PGSC0003DMT400058755	Potato	cytosol	20.7	25.32
PGSC0003DMT400032340	Potato	mitochondrion	25.26	25.21
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	25.88	25.1
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	25.47	25.05
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	24.64	24.9
PGSC0003DMT400092266	Potato	mitochondrion	9.52	24.86
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	26.29	24.24
PGSC0003DMT400077284	Potato	mitochondrion	26.09	24.05
TraesCS6D01G079400.1	Wheat	plastid	22.15	23.73
PGSC0003DMT400080049	Potato	cytosol, plastid	25.47	22.57
PGSC0003DMT400031016	Potato	cytosol	12.22	19.41
PGSC0003DMT400069375	Potato	cytosol	17.6	17.93
PGSC0003DMT400022632	Potato	mitochondrion	22.36	17.31
PGSC0003DMT400021596	Potato	mitochondrion	18.63	14.68

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102581046	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0ZSQ2	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400002798	PGSC:PGSC0003DMG400002798	EnsemblPlants:PGSC0003DMT400007271	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1651	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295C16E
RefSeq:XP_006344770.1	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002798]

Coordinates

chr1:+:78233798..78236920

Molecular Weight (calculated)

55874.0 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.464

Length

483 amino acids

Sequence
(BLAST)

001: MVSKAICLKL LRSTTYRRCF STETAVAETV STPSISQRKR ISDGRRKLSD LINRADSESN FKDALNKLDN EGESIQKLDI IGCINNLRRT DRFDLALQLS
101: EWMESSKIMI SNGDRAIRIH LLANTKGTDS AEMYFDSLQE SEKTSKTYGA LLSSYCRQKM FDKVSKLFEK MKELNFTSTL NYNNVISLHL RNGQPEKVSA
201: LVQEMEQRNI AVDMFTYNQL MNSYALVKDI VSVEAVVEKM EKHQVKFDWL TYGNLAGIYI NTGYLDKAND ILQKMEKMKD MHDREAFHTL ITLYQKTSNP
301: SGVNRSWELL KSVFPTPSKF SYLIVLLALS KLGDSETLEK RFREWESGCK FYDIRVSNVM MESYLDRNMI EEANLLYQNV LKQGVEPNLR TYDAFTNFYI
401: KNSQIDFALK YLEMGASKAN PKKKVWFPKD ESIKMFLAYF EDDNNDPVRV EKFCEIMKKI NRLDSSVYDS LLRPNSAASE VEL

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.