Factsheet for TraesCS6D01G079300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G091100.1	Wheat	mitochondrion	96.86	97.24
TraesCS6B01G119100.1	Wheat	mitochondrion	90.96	93.54
TraesCS6D01G079400.1	Wheat	plastid	73.08	82.48
HORVU6Hr1G016390.10	Barley	plastid	85.66	78.42
TraesCS6D01G079200.1	Wheat	plastid	83.3	78.37
TraesCS6D01G079100.1	Wheat	mitochondrion	71.71	76.2
TraesCS2D01G553100.1	Wheat	mitochondrion	55.6	51.93
PGSC0003DMT400023279	Potato	mitochondrion	35.95	36.97
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	36.15	36.95
VIT_07s0005g01630.t01	Wine grape	mitochondrion	33.79	36.44
TraesCS2D01G553300.1	Wheat	mitochondrion	39.1	35.54
AT4G01990.1	Thale cress	mitochondrion	34.38	34.86
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	33.01	34.64
CDX90962	Canola	mitochondrion	33.99	34.53
CDX91822	Canola	mitochondrion	33.79	34.4
Bra000902.1-P	Field mustard	mitochondrion	33.79	34.33
KRH69203	Soybean	cytosol	26.13	34.19
Bra033321.1-P	Field mustard	mitochondrion	33.99	33.59
KRH31780	Soybean	mitochondrion	31.24	33.4
CDY15237	Canola	mitochondrion	33.2	32.94
CDX89976	Canola	mitochondrion	33.2	32.82
PGSC0003DMT400007271	Potato	mitochondrion	30.26	31.88
Solyc01g100580.2.1	Tomato	mitochondrion	30.06	31.74
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.61	30.91
AT1G02370.1	Thale cress	mitochondrion	32.42	30.73
TraesCS1D01G166800.1	Wheat	mitochondrion	29.27	29.16
TraesCS2D01G389900.1	Wheat	plastid	27.7	27.59
TraesCS5D01G112000.1	Wheat	mitochondrion	27.5	27.45
TraesCS1D01G166700.1	Wheat	mitochondrion	25.93	26.67
TraesCS6D01G341400.1	Wheat	mitochondrion	24.56	24.04
TraesCS2D01G315700.1	Wheat	mitochondrion	20.04	23.13
TraesCS7D01G293300.1	Wheat	mitochondrion	18.47	18.32
TraesCS3D01G195000.1	Wheat	mitochondrion	22.0	18.27

Protein Annotations

EnsemblPlants:TraesCS6D01G079300.1	EnsemblPlantsGene:TraesCS6D01G079300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:45206319..45210628

Molecular Weight (calculated)

58314.3 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.406

Length

509 amino acids

Sequence
(BLAST)

001: MLRTAIAAEA RRRISLAPAR FAHELAQAQA QAQAQTAVPE RGGFEPSWIP LYRRISRLYG RPPGMVAAEM DKYLRKRRPL SADQIVAYVR KLRKFKSNAC
101: ALELMDWMES RGAKLTPGHQ ALRLGLVSKV HGIQAAEEYF WSLPDKSKKT YSSLLNCYGE HRMASKGLEL YEKMKVMDIV PNTLLYNNLM TLYQKAGQPE
201: KIPSTFEEMR ESGISANNFT YLILIESYVT MNDLEAAENV LEELQKVAPV HWSLYTMMAN NYIKQELFGK AEVALKKAEE VMDKAELLSW HFLISLYARS
301: GNSTELKRIW ESLKSTFKKC SNKNYLVMLE ALSMIDDFES LQQIFQEWES SNEHYDMRIT NVMIKAYLDK GMIHEAEAIR QSTMSQGHCN GRTVYMFAEF
401: YLDKSDVTAA LEILRDAKKM LTAHKWVPSE KLTSRFLKHY EESKDVDGVE SFCECLRKLD CLDAEAYEGM MRTYKAAGRT NPSIAQRIED DGIHVGPETT
501: KLLEHVSGN

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.