Factsheet for TraesCS6D01G079100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G079300.1	Wheat	mitochondrion	76.2	71.71
TraesCS6D01G079200.1	Wheat	plastid	75.78	67.1
TraesCS6D01G079400.1	Wheat	plastid	60.13	63.86
TraesCS2D01G553100.1	Wheat	mitochondrion	57.2	50.28
VIT_07s0005g01630.t01	Wine grape	mitochondrion	35.7	36.23
PGSC0003DMT400023279	Potato	mitochondrion	35.49	34.34
KRH69203	Soybean	cytosol	26.72	32.9
TraesCS2D01G553300.1	Wheat	mitochondrion	38.0	32.5
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	32.99	31.73
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	31.73	31.34
Bra000902.1-P	Field mustard	mitochondrion	32.57	31.14
CDX90962	Canola	mitochondrion	32.57	31.14
KRH31780	Soybean	mitochondrion	30.9	31.09
AT4G01990.1	Thale cress	mitochondrion	32.57	31.08
CDX91822	Canola	mitochondrion	31.94	30.6
Bra033321.1-P	Field mustard	mitochondrion	32.57	30.29
CDY15237	Canola	mitochondrion	32.36	30.21
CDX89976	Canola	mitochondrion	32.15	29.9
Solyc01g100580.2.1	Tomato	mitochondrion	29.44	29.25
PGSC0003DMT400007271	Potato	mitochondrion	29.02	28.78
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.15	28.68
AT1G02370.1	Thale cress	mitochondrion	31.73	28.31
TraesCS1D01G166800.1	Wheat	mitochondrion	29.85	27.98
TraesCS1D01G166700.1	Wheat	mitochondrion	26.72	25.86
TraesCS2D01G389900.1	Wheat	plastid	27.35	25.64
TraesCS5D01G112000.1	Wheat	mitochondrion	26.72	25.1
TraesCS2D01G315700.1	Wheat	mitochondrion	20.67	22.45
TraesCS6D01G341400.1	Wheat	mitochondrion	23.59	21.73
TraesCS3D01G195000.1	Wheat	mitochondrion	21.71	16.97
TraesCS7D01G293300.1	Wheat	mitochondrion	17.54	16.37

Protein Annotations

EnsemblPlants:TraesCS6D01G079100.1	EnsemblPlantsGene:TraesCS6D01G079100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:44502870..44507633

Molecular Weight (calculated)

55095.6 Da

IEP (calculated)

7.392

GRAVY (calculated)

-0.356

Length

479 amino acids

Sequence
(BLAST)

001: MLRRAVAAEA RRRISLAPAR LAHELAQPQA ESVVPERRGL EPSWVPLYKR ISKVSHGRPP GIVAAEMDEW LRQRLRLSQD QVLAYVRELR KFKKNEGALE
101: LLDWMEARGA NLSPGHQAVR LDLVSKVHGI QAAEEYFWSL PDISKSVKTY SCLLNCYGQH GLAYKGLDLY EKMKAKNMVL DKLVYNHLMK LYQKAGQPEK
201: VRSTFEEMRE SGISADKFTY FTLIESYITM NDLDTAEKIL EELQKVAPVH WSLYTLMANN YIKVELFGKA EVALKKAEEV MDKAELHPWN VILSLHALCG
301: NSTEVKRIWE SLKSTFKKCL NRSYLVMLQG LSMIDDFESL QQIFQEWQSN HEHYDTRIAN VMIKAYLDKG MRDEAEAIRQ STMAQGHCDE GMVYIFTEFY
401: LDKSGVNTAL EILRDAKNMV TAHKWVPSKE LVSRFLKHYE ESKDVAGAES FLECLKKLEC LDPDAYEAMM QTYVVAGRT

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.