Factsheet for PGSC0003DMT400023279

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	92.93	94.85
VIT_07s0005g01630.t01	Wine grape	mitochondrion	53.33	55.93
KRH31780	Soybean	mitochondrion	47.27	49.16
KRH69203	Soybean	cytosol	37.58	47.81
Bra033321.1-P	Field mustard	mitochondrion	47.68	45.83
CDY15237	Canola	mitochondrion	47.47	45.81
CDX89976	Canola	mitochondrion	47.47	45.63
AT4G01990.1	Thale cress	mitochondrion	45.25	44.62
CDX91822	Canola	mitochondrion	45.05	44.6
Bra000902.1-P	Field mustard	mitochondrion	44.85	44.31
CDX90962	Canola	mitochondrion	44.85	44.31
AT1G02370.1	Thale cress	mitochondrion	47.68	43.95
GSMUA_Achr11P...	Banana	mitochondrion	44.04	42.0
Os01t0301000-01	Rice	mitochondrion	42.63	40.42
PGSC0003DMT400002590	Potato	cytosol	38.99	39.23
EES02848	Sorghum	mitochondrion	41.41	38.68
Zm00001d009122_P001	Maize	mitochondrion	39.8	38.25
TraesCS6B01G118900.1	Wheat	cytosol	31.52	37.5
TraesCS2B01G584000.2	Wheat	mitochondrion	41.82	37.43
PGSC0003DMT400007271	Potato	mitochondrion	36.36	37.27
TraesCS2A01G552700.1	Wheat	mitochondrion	41.41	37.21
TraesCS2D01G553300.1	Wheat	mitochondrion	42.02	37.14
TraesCS6A01G091100.1	Wheat	mitochondrion	37.17	36.29
TraesCS6D01G079300.1	Wheat	mitochondrion	36.97	35.95
TraesCS6D01G079100.1	Wheat	mitochondrion	34.34	35.49
TraesCS2B01G583500.1	Wheat	mitochondrion	34.34	35.42
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	35.76	35.33
TraesCS6A01G091000.1	Wheat	mitochondrion	36.36	35.29
Os01t0301700-01	Rice	mitochondrion	35.76	35.12
TraesCS6A01G090800.2	Wheat	mitochondrion	34.14	35.06
TraesCS6B01G119100.1	Wheat	mitochondrion	34.55	34.55
PGSC0003DMT400031020	Potato	cytosol	8.28	34.45
TraesCS6A01G091200.2	Wheat	cytosol	25.25	34.25
TraesCS6B01G119000.1	Wheat	mitochondrion	33.13	34.24
PGSC0003DMT400092266	Potato	mitochondrion	12.73	34.05
TraesCS6A01G090900.1	Wheat	mitochondrion	32.93	34.03
Os01t0301500-01	Rice	cytosol, mitochondrion	33.13	33.88
TraesCS6D01G079200.1	Wheat	plastid	36.97	33.83
HORVU6Hr1G016360.7	Barley	mitochondrion	33.13	32.8
HORVU6Hr1G016390.10	Barley	plastid	36.16	32.19
TraesCS2A01G552100.1	Wheat	mitochondrion	35.56	32.0
PGSC0003DMT400032340	Potato	mitochondrion	31.11	31.82
TraesCS2D01G553100.1	Wheat	mitochondrion	34.55	31.38
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	31.11	31.36
PGSC0003DMT400058755	Potato	cytosol	24.44	30.63
TraesCS6D01G079400.1	Wheat	plastid	27.27	29.93
PGSC0003DMT400077284	Potato	mitochondrion	30.71	29.01
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	30.71	29.01
PGSC0003DMT400080049	Potato	cytosol, plastid	31.31	28.44
PGSC0003DMT400004477	Potato	plastid	27.07	27.86
PGSC0003DMT400047256	Potato	extracellular	17.98	27.55
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	26.26	27.2
PGSC0003DMT400011461	Potato	mitochondrion	21.62	26.75
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.46	26.31
PGSC0003DMT400069375	Potato	cytosol	21.21	22.15
PGSC0003DMT400031016	Potato	cytosol	13.54	22.04
PGSC0003DMT400022632	Potato	mitochondrion	22.83	18.11
PGSC0003DMT400021596	Potato	mitochondrion	20.61	16.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400023279	EnsemblPlantsGene:PGSC0003DMG400009016	EntrezGene:102596329	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFscan:PS51375	PGSC:PGSC0003DMG400009016	RefSeq:XP_006349176.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI00029673C2	UniProt:M1AI32	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009016]

Coordinates

chr1:+:62861420..62863869

Molecular Weight (calculated)

57746.4 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.494

Length

495 amino acids

Sequence
(BLAST)

001: MIRNLTRQIS NETRLNLRRL CFTAAEQSGR DSRLYRRLSA LGATKGSVTE TINAYTREGR VVKKYELEKC IKELRKYKRY QHALEIMEWM EKRGINFSYG
101: DYGVRLDLIA KVQGITAAEK YFGGLSPSMQ NQSTYGALLN CYCVEKMADK ALSFFEKMDQ LKFTNKSLAF NNLMSLYMRL GQPEKVAPLV QEMKSRKVPL
201: CTFSYNIWMN SYSCLDDIEG VERVFEELKQ ENAKECDWTT YSNLAVAYVK AGHNEKAELA LKKLEEEMGP RNRQAYHYLI SLHARISNLG EVYRIWGSLK
301: SSLDLTNSSY LVMLQSLSKH NDMDGLKKYY EEWESSCSTY DMRLANNVIG AYLRHDMLNN AEKVFHSALK RSQGPFFLAW EMFMLFYLRK RQINFAQQCM
401: EAIASRIKEN KWRPKYETIS NFLEYFVEEK DVDGAEDFYK FLKKVNCLSS DVYSSLLRTY AAANRTTDDM RLRIKEDGIE MSCELEELLK SVCPE

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.