Factsheet for TraesCS6A01G091100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G079300.1	Wheat	mitochondrion	97.24	96.86
TraesCS6B01G119100.1	Wheat	mitochondrion	91.52	93.74
TraesCS6A01G091200.2	Wheat	cytosol	63.91	88.77
TraesCS6A01G091000.1	Wheat	mitochondrion	82.05	81.57
HORVU6Hr1G016390.10	Barley	plastid	86.78	79.14
TraesCS6A01G090900.1	Wheat	mitochondrion	71.99	76.2
TraesCS6A01G090800.2	Wheat	mitochondrion	71.79	75.52
TraesCS2A01G552100.1	Wheat	mitochondrion	57.0	52.55
PGSC0003DMT400023279	Potato	mitochondrion	36.29	37.17
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	36.29	36.95
VIT_07s0005g01630.t01	Wine grape	mitochondrion	34.12	36.65
TraesCS2A01G552700.1	Wheat	mitochondrion	38.66	35.57
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	33.33	34.85
KRH69203	Soybean	cytosol	26.63	34.7
AT4G01990.1	Thale cress	mitochondrion	34.12	34.46
CDX90962	Canola	mitochondrion	33.73	34.13
CDX91822	Canola	mitochondrion	33.53	34.0
Bra000902.1-P	Field mustard	mitochondrion	33.53	33.93
KRH31780	Soybean	mitochondrion	31.76	33.82
Bra033321.1-P	Field mustard	mitochondrion	34.32	33.79
CDY15237	Canola	mitochondrion	33.53	33.14
CDX89976	Canola	mitochondrion	33.53	33.01
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.73	31.84
PGSC0003DMT400007271	Potato	mitochondrion	30.18	31.68
TraesCS4A01G428500.1	Wheat	mitochondrion	33.53	31.54
Solyc01g100580.2.1	Tomato	mitochondrion	29.98	31.54
AT1G02370.1	Thale cress	mitochondrion	32.74	30.91
TraesCS1A01G168800.1	Wheat	mitochondrion	29.39	29.16
TraesCS2A01G391600.1	Wheat	plastid	26.82	27.04
TraesCS5A01G099700.1	Wheat	mitochondrion	27.02	26.86
TraesCS2A01G318100.1	Wheat	mitochondrion	20.32	24.58
TraesCS6A01G358600.1	Wheat	mitochondrion	24.06	23.6
TraesCS1A01G168700.1	Wheat	mitochondrion	26.43	22.95
TraesCS7A01G296400.1	Wheat	mitochondrion	18.93	18.71
TraesCS3A01G191200.1	Wheat	mitochondrion	21.7	17.97

Protein Annotations

EnsemblPlants:TraesCS6A01G091100.1	EnsemblPlantsGene:TraesCS6A01G091100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:59783313..59787462

Molecular Weight (calculated)

57962.9 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.382

Length

507 amino acids

Sequence
(BLAST)

001: MLRTAIAAEA RRRISLAPAR FAHELAQAQA QAQTAVPERG GFDPSWAPLY RRISRLYGRP PGMVAAEMDN YLRKRRPLSA DQIVAYVRKL RKFKSNACAL
101: ELMDWMESRG AKLIPGHQAL RLGLVSKVHG IQAAEEYFWS LPDKSKKTYS SLLNCYGEHR MASKGLELYE KMKVMDIVPN TLLYNNLMTL YQKAGQPEKI
201: PSTFEEMRES GISANNFTYC ILIESYVTMN DLEAAEKVLE ELQKVAPVHW SLYTMMANNY LKQELFGKAE VALKKAEEVM DKAELLSWHF LISLYARSGN
301: STELKRIWES LKSTFKKCSN KNYLVMLEAL SMIDDLESLQ QIFQEWESSN EHYDMRITNV MIKAYLDKGM IDEAEAIRQS TMSQGHCNGR TVYMFAEFYL
401: DKSDVTAALE ILRDAKKMLT AHKWVPSEKL TSRFLKHYEE SKDVDGVESF CECLKKLECL DAEAYEGMVR TYIAAGRTNP SIAQRIEDDG IHVGPETTKL
501: LERVSGN

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.