Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G079400.1 | Wheat | plastid | 95.07 | 76.94 |
| TraesCS6A01G091100.1 | Wheat | mitochondrion | 88.77 | 63.91 |
| TraesCS6A01G091000.1 | Wheat | mitochondrion | 80.82 | 57.84 |
| HORVU6Hr1G016390.10 | Barley | plastid | 85.21 | 55.94 |
| TraesCS6A01G090900.1 | Wheat | mitochondrion | 68.49 | 52.19 |
| TraesCS6A01G090800.2 | Wheat | mitochondrion | 66.85 | 50.62 |
| TraesCS2A01G552100.1 | Wheat | mitochondrion | 55.89 | 37.09 |
| Solyc01g079320.2.1 | Tomato | cytosol, mitochondrion | 34.25 | 25.77 |
| VIT_14s0060g01120.t01 | Wine grape | cytosol, mitochondrion | 35.07 | 25.7 |
| PGSC0003DMT400023279 | Potato | mitochondrion | 34.25 | 25.25 |
| KRH69203 | Soybean | cytosol | 26.3 | 24.68 |
| TraesCS2A01G552700.1 | Wheat | mitochondrion | 35.89 | 23.77 |
| VIT_07s0005g01630.t01 | Wine grape | mitochondrion | 30.68 | 23.73 |
| TraesCS7A01G061300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.79 | 23.65 |
| AT4G01990.1 | Thale cress | mitochondrion | 32.33 | 23.51 |
| TraesCS4A01G428500.1 | Wheat | mitochondrion | 34.52 | 23.38 |
| KRH31780 | Soybean | mitochondrion | 30.41 | 23.32 |
| Bra000902.1-P | Field mustard | mitochondrion | 30.96 | 22.55 |
| CDX90962 | Canola | mitochondrion | 30.96 | 22.55 |
| Bra033321.1-P | Field mustard | mitochondrion | 31.78 | 22.52 |
| CDX91822 | Canola | mitochondrion | 30.68 | 22.4 |
| CDY15237 | Canola | mitochondrion | 30.96 | 22.03 |
| CDX89976 | Canola | mitochondrion | 30.96 | 21.94 |
| Solyc01g100580.2.1 | Tomato | mitochondrion | 27.95 | 21.16 |
| PGSC0003DMT400007271 | Potato | mitochondrion | 27.12 | 20.5 |
| TraesCS1A01G168800.1 | Wheat | mitochondrion | 28.49 | 20.35 |
| AT1G02370.1 | Thale cress | mitochondrion | 29.32 | 19.93 |
| TraesCS2A01G391600.1 | Wheat | plastid | 27.12 | 19.68 |
| TraesCS5A01G099700.1 | Wheat | mitochondrion | 26.58 | 19.02 |
| TraesCS2A01G318100.1 | Wheat | mitochondrion | 20.0 | 17.42 |
| TraesCS6A01G358600.1 | Wheat | mitochondrion | 23.56 | 16.63 |
| TraesCS1A01G168700.1 | Wheat | mitochondrion | 23.84 | 14.9 |
| TraesCS3A01G191200.1 | Wheat | mitochondrion | 23.01 | 13.73 |
| TraesCS7A01G296400.1 | Wheat | mitochondrion | 19.18 | 13.65 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G091200.2 | EnsemblPlantsGene:TraesCS6A01G091200 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF942 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:59808413..59811558
Molecular Weight (calculated)
41555.1 Da
IEP (calculated)
6.431
GRAVY (calculated)
-0.317
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAEMDNYL RKRRPLSADQ IVAYVRKLRK FKSNACALEL MDWMESRGAK LTLEHQALRL GLVSKVHGIQ AAEEYFWSLP DKSKETYVCL LNCYGEHGMA
101: CKGLELYEKM KAMDIVPDTL VYNSLMTLYQ KADQPEKIPS TFEEMRESGI SANNFTYFTL IESYIRMNDL EAAEKVLEEL EKVAPVHWSL YTLMANSYIK
201: LELFGKSEVA LKKAEEVMDK AELLSILAIQ PSKSFRSGNR GHCNGRTVYI FAEFYLDKSH VTAALEILRD AKKMLTAHKW VPSEKLTSRF LKHYEESKDV
301: DGVESFCECL KKLECLDAEA YEGIVRTYIA AGRTNPSIAQ RIEDDGIHVG PETTKLLESV SGNSK
101: CKGLELYEKM KAMDIVPDTL VYNSLMTLYQ KADQPEKIPS TFEEMRESGI SANNFTYFTL IESYIRMNDL EAAEKVLEEL EKVAPVHWSL YTLMANSYIK
201: LELFGKSEVA LKKAEEVMDK AELLSILAIQ PSKSFRSGNR GHCNGRTVYI FAEFYLDKSH VTAALEILRD AKKMLTAHKW VPSEKLTSRF LKHYEESKDV
301: DGVESFCECL KKLECLDAEA YEGIVRTYIA AGRTNPSIAQ RIEDDGIHVG PETTKLLESV SGNSK
001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.