Factsheet for TraesCS6A01G091000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G079200.1	Wheat	plastid	96.27	90.76
TraesCS6A01G091100.1	Wheat	mitochondrion	81.57	82.05
TraesCS6A01G091200.2	Wheat	cytosol	57.84	80.82
TraesCS6A01G090900.1	Wheat	mitochondrion	70.59	75.16
TraesCS6A01G090800.2	Wheat	mitochondrion	70.39	74.48
TraesCS2A01G552100.1	Wheat	mitochondrion	55.29	51.27
PGSC0003DMT400023279	Potato	mitochondrion	35.29	36.36
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	35.1	35.94
VIT_07s0005g01630.t01	Wine grape	mitochondrion	32.16	34.75
TraesCS2A01G552700.1	Wheat	mitochondrion	37.45	34.66
AT4G01990.1	Thale cress	mitochondrion	33.73	34.26
CDX91822	Canola	mitochondrion	33.53	34.2
CDX90962	Canola	mitochondrion	33.53	34.13
KRH69203	Soybean	cytosol	25.88	33.93
Bra000902.1-P	Field mustard	mitochondrion	33.33	33.93
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	32.16	33.81
Bra033321.1-P	Field mustard	mitochondrion	34.12	33.79
CDX89976	Canola	mitochondrion	33.53	33.2
CDY15237	Canola	mitochondrion	33.33	33.14
KRH31780	Soybean	mitochondrion	30.39	32.56
PGSC0003DMT400007271	Potato	mitochondrion	29.22	30.85
Solyc01g100580.2.1	Tomato	mitochondrion	29.02	30.71
AT1G02370.1	Thale cress	mitochondrion	31.96	30.35
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.96	30.35
TraesCS4A01G428500.1	Wheat	mitochondrion	31.76	30.06
TraesCS1A01G168800.1	Wheat	mitochondrion	27.84	27.79
TraesCS5A01G099700.1	Wheat	mitochondrion	26.47	26.47
TraesCS2A01G391600.1	Wheat	plastid	25.88	26.24
TraesCS2A01G318100.1	Wheat	mitochondrion	19.8	24.11
TraesCS6A01G358600.1	Wheat	mitochondrion	23.33	23.02
TraesCS1A01G168700.1	Wheat	mitochondrion	25.69	22.43
TraesCS3A01G191200.1	Wheat	mitochondrion	22.55	18.79
TraesCS7A01G296400.1	Wheat	mitochondrion	18.43	18.32

Protein Annotations

EnsemblPlants:TraesCS6A01G091000.1	EnsemblPlantsGene:TraesCS6A01G091000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF942	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:59707117..59710534

Molecular Weight (calculated)

58240.5 Da

IEP (calculated)

8.751

GRAVY (calculated)

-0.353

Length

510 amino acids

Sequence
(BLAST)

001: MLRTAIPAAA RRRISFAPAR FAHELAQVQA QVQSAVPGRD GLEPSWVPLY RRISKLSHGR QPGMAAAEMT KYLRERRPLS EYQIVAYIRK LRKFKRHACX
101: XXLMDWMEAR GAKLTPGHQA LRIDLVSKVH GIQAAEEYFW SLPDILKSRK AYSCLLNCYG EHGMAFKGLK FYEKMKAKNI VPNTLVYNSL MALYKKAGQP
201: EKIPSTFEEM RESGITANSF TYFSLVESYV TMNDLEAAEK VLEELQKVAP VHWSLYTLMA NSYIKLELCE KAEVALKKAE EVMNKDELSS WYFLLSIYAR
301: CGNATEVKRI WESLKSTFKK CLNRSYLVML QALSTIDDFE SLQQTFQEWE SSHEQYDMRI TNVMIKAYLD KGMIDEAEAI RQRTMAKGRC DYRTIYIFAE
401: FYLEKSNVTG ALEILRDAKN MVTAHKWVPS KKLTGRFLKH YEESKDVDGV ESFCECLRKL ECLDAEAYEG MMRTYIAAGR TNPSIAQRIE DDGIHVGPET
501: TKLLECVSGN

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.