Factsheet for Solyc01g100580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007271	Potato	mitochondrion	94.81	94.62
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	53.73	52.01
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	34.85	34.64
TraesCS2B01G583500.1	Wheat	mitochondrion	32.57	32.71
GSMUA_Achr11P...	Banana	mitochondrion	34.44	31.98
Zm00001d009122_P001	Maize	mitochondrion	33.82	31.65
TraesCS6B01G118900.1	Wheat	cytosol	26.97	31.25
Os01t0301000-01	Rice	mitochondrion	33.61	31.03
Solyc11g006380.1.1	Tomato	cytosol	31.54	30.89
TraesCS6D01G079300.1	Wheat	mitochondrion	31.74	30.06
EES02848	Sorghum	mitochondrion	32.99	30.0
TraesCS6A01G091100.1	Wheat	mitochondrion	31.54	29.98
TraesCS6D01G079100.1	Wheat	mitochondrion	29.25	29.44
TraesCS6A01G090900.1	Wheat	mitochondrion	29.25	29.44
TraesCS6B01G119100.1	Wheat	mitochondrion	30.08	29.29
TraesCS6A01G091000.1	Wheat	mitochondrion	30.71	29.02
TraesCS6B01G119000.1	Wheat	mitochondrion	28.84	29.02
Os01t0301700-01	Rice	mitochondrion	30.08	28.77
TraesCS2B01G584000.2	Wheat	mitochondrion	32.99	28.75
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	29.88	28.74
TraesCS2A01G552100.1	Wheat	mitochondrion	32.78	28.73
TraesCS6A01G090800.2	Wheat	mitochondrion	28.63	28.63
TraesCS2D01G553100.1	Wheat	mitochondrion	32.16	28.44
TraesCS2A01G552700.1	Wheat	mitochondrion	32.16	28.13
TraesCS2D01G553300.1	Wheat	mitochondrion	32.57	28.04
TraesCS6A01G091200.2	Wheat	cytosol	21.16	27.95
Os01t0301500-01	Rice	cytosol, mitochondrion	28.01	27.89
TraesCS6D01G079200.1	Wheat	plastid	31.12	27.73
HORVU6Hr1G016360.7	Barley	mitochondrion	28.42	27.4
Solyc07g054100.1.1	Tomato	cytosol	17.84	26.63
HORVU6Hr1G016390.10	Barley	plastid	30.08	26.08
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	26.14	25.56
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	25.93	25.46
Solyc10g047370.1.1	Tomato	mitochondrion	20.95	25.31
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	23.65	25.11
Solyc06g005140.2.1	Tomato	mitochondrion	26.56	24.62
TraesCS6D01G079400.1	Wheat	plastid	22.61	24.17
Solyc01g081320.2.1	Tomato	plastid	24.69	22.97
Solyc01g089870.2.1	Tomato	nucleus	25.73	22.75
Solyc07g063220.2.1	Tomato	plastid	25.31	21.98
Solyc12g020050.1.1	Tomato	plastid	22.41	17.31
Solyc06g071900.2.1	Tomato	mitochondrion	17.84	16.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B189
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1651
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc01g100580.2	EnsemblPlants:Solyc01g100580.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00027676D4	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:90566036..90569106

Molecular Weight (calculated)

55539.6 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.436

Length

482 amino acids

Sequence
(BLAST)

001: MVGRAICLKL LRSTTYRRCF STETAAVETI STPAISQRKR ISDGRRKLSD LINRADSESN IKDALNKLDN EGESIQKIDI VGCINNLRRT DRFDLALQLS
101: EWMESSKIMI SNGDRAIRIH LLANTKGTDS AEMYFDSLQE SEKTSKTYGA LLSSYCRQKM FDKVSKLFEK MKELNFTSTL NYNNVISLYL RSGQPEKVSA
201: LVQEMEQRNI AVDIFTYNQL MNSYALVKDI VSVEAVLEKM EKHQVKFDWL TYGNLAGIYI NNGYRDKAND ILQKMEKMKD MHDREAFHTL ITLYQKTSNP
301: SGVNRSWELL KSVFPTPSKF SYLIVLLALS KLGDSEALEK RFRELESHCK FFDIRVSNVM MESYLDRNMI EEANLLYENV LKQGVEPNLR TYDAFTNFYI
401: KNSQIDSALK YLEMGASKAN PKKKVWFPKD ESIKMFLAYF EDSNDPVRAE KFCEIMKKIN RLDSSVYDSL LSTNSAASEV EL

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.