Factsheet for Solyc11g006380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002590	Potato	cytosol	96.34	96.34
VIT_00s0394g00020.t01	Wine grape	cytosol	70.94	71.37
KRH45616	Soybean	nucleus	69.31	69.59
CDY24553	Canola	mitochondrion	40.24	68.75
CDY50357	Canola	mitochondrion	27.24	67.0
AT1G60770.1	Thale cress	cytosol	65.45	65.58
Bra031484.1-P	Field mustard	mitochondrion	63.62	63.62
CDY34141	Canola	mitochondrion	63.62	63.62
CDY46999	Canola	mitochondrion	63.41	63.54
KRG99413	Soybean	cytosol, mitochondrion	45.33	63.53
CDX96239	Canola	mitochondrion	63.21	63.34
Bra027131.1-P	Field mustard	mitochondrion	62.6	62.73
GSMUA_Achr1P16170_001	Banana	cytosol	59.35	59.96
CDY50358	Canola	cytosol	26.83	56.17
Os04t0320200-01	Rice	mitochondrion	58.54	54.96
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.94	54.0
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.94	54.0
TraesCS4A01G428500.1	Wheat	mitochondrion	59.15	53.99
EER87766	Sorghum	cytosol	58.74	53.92
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	59.35	52.99
CDY24554	Canola	cytosol	16.46	52.94
Zm00001d045492_P004	Maize	cytosol	57.72	47.65
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	37.2	37.73
Solyc01g100580.2.1	Tomato	mitochondrion	30.89	31.54
Solyc07g054100.1.1	Tomato	cytosol	19.72	30.03
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	29.88	29.94
Solyc06g005140.2.1	Tomato	mitochondrion	30.08	28.46
Solyc01g081320.2.1	Tomato	plastid	29.67	28.19
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	25.61	27.75
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	27.03	26.98
Solyc10g047370.1.1	Tomato	mitochondrion	21.75	26.82
Solyc01g089870.2.1	Tomato	nucleus	29.67	26.79
Solyc07g063220.2.1	Tomato	plastid	26.83	23.78
Solyc06g071900.2.1	Tomato	mitochondrion	22.76	20.93
Solyc12g020050.1.1	Tomato	plastid	24.8	19.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4D4Q1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc11g006380.1	EnsemblPlants:Solyc11g006380.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002769DCA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:1086710..1089228

Molecular Weight (calculated)

56188.1 Da

IEP (calculated)

9.626

GRAVY (calculated)

-0.412

Length

492 amino acids

Sequence
(BLAST)

001: MASFMQKLAR TKNIGKRSKK KYLEEALYKN LFKEGSEENH VRKNLNQFLK SHKSAFKWEV GKSIKVLRQR KLYAPALKLS ETMEKRGMNR TISDQAIHID
101: IVAKSKGIEA AESYFLNLPE TSKDLLTYCA LLNCYCKELM TEKAEALMEK VKELNLSLSS MPYNSLMTLY TKTGHPEKIP AIIQEMKAND VMPDSYTYNV
201: WMRALSSMND ISGVERVVDE MKRDGRVAED WTTYSNLASI YADAGLTDKA VKALKELEKK NACRNITAYQ FLITLYGRVG TLLEVYRVWR SLRLAFPRTA
301: NISYLNMIQV LVNLNDLPGA EKCFKEWESG CPTYDIRIAN VLIGAYTKQS SLEKAEQLKE RARRSGAKPN AKTWEIFMDY YLQSGDIKSA IDCVDKAVSI
401: GRGDGSKWFP SSAIVTKFMS HFKQHKDVAG AEHFVEMLKK AKDELGVDIF ESLLRTYIAS EKTSPIMRRR IKMENIELTD EGKRLLDAVS VE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.