CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99413	Soybean	cytosol, mitochondrion	62.24	86.89
VIT_00s0394g00020.t01	Wine grape	cytosol	75.71	75.87
PGSC0003DMT400002590	Potato	cytosol	69.59	69.31
Solyc11g006380.1.1	Tomato	cytosol	69.59	69.31
CDY24553	Canola	mitochondrion	39.8	67.71
CDY50357	Canola	mitochondrion	27.35	67.0
AT1G60770.1	Thale cress	cytosol	65.51	65.38
CDY34141	Canola	mitochondrion	65.1	64.84
Bra031484.1-P	Field mustard	mitochondrion	64.49	64.23
CDX96239	Canola	mitochondrion	63.88	63.75
CDY46999	Canola	mitochondrion	63.67	63.54
Bra027131.1-P	Field mustard	mitochondrion	63.27	63.14
GSMUA_Achr1P16170_001	Banana	cytosol	62.45	62.83
Os04t0320200-01	Rice	mitochondrion	61.22	57.25
CDY50358	Canola	cytosol	27.35	57.02
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.02	55.68
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.02	55.68
CDY24554	Canola	cytosol	17.35	55.56
TraesCS4A01G428500.1	Wheat	mitochondrion	61.02	55.47
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	61.63	54.81
EER87766	Sorghum	cytosol	59.8	54.66
Zm00001d045492_P004	Maize	cytosol	59.8	49.16
KRH69203	Soybean	cytosol	31.63	39.85
KRH31780	Soybean	mitochondrion	35.51	36.55
KRH10858	Soybean	mitochondrion	29.39	29.63
KRH55328	Soybean	plastid	27.76	27.64
KRH43872	Soybean	mitochondrion	22.04	27.34
KRH66454	Soybean	plastid	30.0	26.49
KRH48889	Soybean	plastid	29.39	26.37
KRH10583	Soybean	mitochondrion	21.43	26.32
KRH52991	Soybean	mitochondrion	26.53	26.21
KRH22399	Soybean	cytosol	25.31	26.05
KRH26940	Soybean	cytosol	25.51	25.2
KRH66764	Soybean	cytosol	20.41	24.1
KRH62276	Soybean	mitochondrion	25.71	21.91
KRH23068	Soybean	mitochondrion	21.63	20.91
KRH10262	Soybean	mitochondrion	21.43	20.71
KRH69049	Soybean	mitochondrion	25.1	20.2
KRH31614	Soybean	mitochondrion	24.49	20.0
KRG95098	Soybean	mitochondrion	22.86	18.36

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100801616	MapMan:35.1	EMBL:ACUP02005272	EnsemblPlantsGene:GLYMA_08G283500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1KXC0	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH45616	ProteinID:KRH45616	ProteinID:KRH45616.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233858D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:38975072..38978280

Molecular Weight (calculated)

56201.6 Da

IEP (calculated)

9.543

GRAVY (calculated)

-0.313

Length

490 amino acids

Sequence
(BLAST)

001: MSIMQLYGRS KSVVKRSKKY LEEALYMKLF KDGSSQLIVR QSLNNFVKSR KRVYKWEVGD TLKKLRDRKL YQPALKLSET MAKRNMIKTV SDHAIHLDLL
101: AKARGITAAE NYFVSLPEPS KNHLCYGALL NCYCKELMTE KSEGLMEKMK ELSLPLSSMP YNSLMTLYTK VGQPEKIPSL IQEMKASNVM LDSYTYNVWM
201: RALAAVNDIS GVERVHDEMK RGGQVTGDWT TYSNLASIFV DAGLFDKAEV ALKELEKRNA FKDLTAYQFL ITLYGRTGNL YEVYRVWRSL RLAFPKTANI
301: SYLNMIQVLV NLKDLPGAEK CFREWECGCP TYDIRVANVL IRAYVKLDML EKAEELKERA RRRGAKPNAK TLEIFMDYYL LKGDFKLAVD YLNEAISMGR
401: GNGEKWVPSS RIISIMMRHF EQEKDVDGAE EFLEILKKSV ESPGVEVFES LIRTYAAAGR ISSAMQRRLK MENVEVSEGT QKLLEAISVE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.