CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26940	Soybean	cytosol	90.76	87.1
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	43.7	41.68
Solyc07g054100.1.1	Tomato	cytosol	27.73	40.87
PGSC0003DMT400047256	Potato	extracellular	27.1	39.94
CDY35213	Canola	cytosol	3.36	39.02
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	39.5	37.75
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	38.66	37.32
AT2G20710.1	Thale cress	mitochondrion	36.97	35.92
CDY39781	Canola	mitochondrion	35.92	35.77
Bra036673.1-P	Field mustard	mitochondrion	35.71	35.56
CDY03299	Canola	mitochondrion	35.29	35.52
Os10t0501000-01	Rice	cytosol	27.94	29.49
Os10t0501300-01	Rice	mitochondrion	31.72	29.43
KRH55328	Soybean	plastid	29.83	28.86
GSMUA_Achr5P20750_001	Banana	mitochondrion	32.98	28.75
TraesCS1B01G188200.1	Wheat	mitochondrion	29.62	28.66
KRH10858	Soybean	mitochondrion	28.78	28.19
TraesCS1D01G166700.1	Wheat	mitochondrion	28.78	27.68
CDY65573	Canola	mitochondrion	21.43	27.57
Bra011054.1-P	Field mustard	mitochondrion	19.75	27.57
KRH69203	Soybean	cytosol	22.48	27.51
KRH48889	Soybean	plastid	31.3	27.29
CDY35212	Canola	mitochondrion	15.97	27.05
OQU91552	Sorghum	mitochondrion	28.15	26.27
KRH52991	Soybean	mitochondrion	27.1	26.01
CDY27645	Canola	mitochondrion	14.08	25.87
KRH66454	Soybean	plastid	30.04	25.77
CDY71968	Canola	plastid	15.76	25.68
Zm00001d032543_P001	Maize	mitochondrion	27.73	25.53
KRH31780	Soybean	mitochondrion	25.42	25.42
KRH45616	Soybean	nucleus	26.05	25.31
Os10t0501200-00	Rice	mitochondrion	32.77	24.92
TraesCS1A01G168700.1	Wheat	mitochondrion	29.41	23.97
KRG99413	Soybean	cytosol, mitochondrion	17.65	23.93
AT1G28020.1	Thale cress	cytosol, plastid	24.79	23.89
KRH43872	Soybean	mitochondrion	19.75	23.8
AT1G43010.1	Thale cress	mitochondrion	12.39	22.96
KRH10583	Soybean	mitochondrion	19.12	22.81
CDY05786	Canola	plastid	23.11	22.68
KRH66764	Soybean	cytosol	19.75	22.65
Bra036496.1-P	Field mustard	plastid	22.9	22.47
CDY31943	Canola	plastid	22.9	22.47
Bra032862.1-P	Field mustard	mitochondrion	17.44	21.9
KRH62276	Soybean	mitochondrion	26.26	21.74
AT2G20720.1	Thale cress	cytosol	13.24	21.07
Bra032863.1-P	Field mustard	mitochondrion	17.65	21.0
CDY27647	Canola	mitochondrion	17.86	20.88
AT1G28000.1	Thale cress	mitochondrion	16.81	20.62
CDY48421	Canola	mitochondrion	17.65	20.34
AT3G11350.1	Thale cress	mitochondrion	15.34	20.33
AT3G11380.1	Thale cress	mitochondrion	23.11	20.33
CDY00734	Canola	mitochondrion	7.35	19.77
KRH10262	Soybean	mitochondrion	19.12	17.95
KRH69049	Soybean	mitochondrion	22.69	17.73
KRG95098	Soybean	mitochondrion	22.69	17.7
KRH23068	Soybean	mitochondrion	18.7	17.55
KRH31614	Soybean	mitochondrion	21.85	17.33
Bra032865.1-P	Field mustard	cytosol	20.59	17.07
Bra001400.1-P	Field mustard	mitochondrion, plastid	25.42	16.15
CDY53325	Canola	mitochondrion	23.53	16.05
CDY53324	Canola	mitochondrion, plastid	24.16	15.73
CDX73880	Canola	mitochondrion	16.18	15.37
CDY66759	Canola	cytosol	19.54	12.45
Bra032866.1-P	Field mustard	mitochondrion	16.18	12.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0H859	EMBL:ACUP02008411	EnsemblPlantsGene:GLYMA_13G297800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH22399	ProteinID:KRH22399	ProteinID:KRH22399.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006ED9902	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:39650874..39653153

Molecular Weight (calculated)

54272.2 Da

IEP (calculated)

5.954

GRAVY (calculated)

-0.404

Length

476 amino acids

Sequence
(BLAST)

001: MCGVSVCGSL GMCMYSTESV VASLENGVFK NGDPLSSVSP ILNQWVEEGR EVTKLQLEDL AYRLTQSRRF THALQVLEWM SNERNYELSP GSIAKQINLI
101: SKVHGLEQAE RYFRGIPDDK IEFKIYAALL RCYAEHKSVE EAEAELHPVN ITPCCNMMLE LYAKKGKYEK LDRLMQEMKE KDICNASTYT IRLNAYVVVT
201: DIKGMEKLLM QMEADPVATV DWYTYMTAAN GYRRVHNFEK VAEMLKKSEH LARGNTRRLA FESIQTMYAI IGNKDEVYRL WNMCTSLKKP NNSSYIRMLS
301: SLAKLDEIDG AEKILEEWES KYANFDVRIP NLMISAYCKW GQFDKAEAYI RRLLDGGKQL DGRTWDRLAC GYKAGNDMEK AVQAMKKAVS KNLGGRRPDP
401: FTLVACVKYL KEKGDLDLAL EILKLCIENS HISVTSYDGL SSYVHSETPD TGPLDLIKGD YQMFENENTQ LLDGEN

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.