Factsheet for Bra001400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71968	Canola	plastid	38.45	98.63
CDY53324	Canola	mitochondrion, plastid	95.46	97.81
CDX73880	Canola	mitochondrion	65.42	97.8
AT3G11350.1	Thale cress	mitochondrion	26.84	55.99
Bra032865.1-P	Field mustard	cytosol	37.38	48.78
Bra011054.1-P	Field mustard	mitochondrion	20.29	44.57
Bra032866.1-P	Field mustard	mitochondrion	34.05	39.97
Bra032862.1-P	Field mustard	mitochondrion	18.02	35.62
Bra032863.1-P	Field mustard	mitochondrion	18.29	34.25
Bra036673.1-P	Field mustard	mitochondrion	20.69	32.43
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	19.63	29.46
PGSC0003DMT400047256	Potato	extracellular	11.88	27.55
Bra038762.1-P	Field mustard	mitochondrion	17.89	27.46
Solyc07g054100.1.1	Tomato	cytosol	11.75	27.24
Os10t0501300-01	Rice	mitochondrion	18.42	26.9
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	17.62	26.77
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	17.62	26.51
Zm00001d032543_P001	Maize	mitochondrion	17.89	25.92
OQU91552	Sorghum	mitochondrion	17.62	25.88
GSMUA_Achr5P20750_001	Banana	mitochondrion	18.83	25.82
KRH22399	Soybean	cytosol	16.15	25.42
KRH26940	Soybean	cytosol	16.56	25.0
Bra036496.1-P	Field mustard	plastid	16.15	24.95
Bra033215.1-P	Field mustard	mitochondrion	16.82	24.61
Bra018528.1-P	Field mustard	mitochondrion	16.82	24.51
Bra028632.1-P	Field mustard	mitochondrion	13.22	24.5
TraesCS1B01G188200.1	Wheat	mitochondrion	15.89	24.19
Os10t0501000-01	Rice	cytosol	14.55	24.17
TraesCS1D01G166700.1	Wheat	mitochondrion	15.62	23.64
Bra031484.1-P	Field mustard	mitochondrion	14.95	22.76
Bra000902.1-P	Field mustard	mitochondrion	15.22	22.75
Bra027131.1-P	Field mustard	mitochondrion	14.82	22.61
Bra020588.1-P	Field mustard	mitochondrion	14.42	22.0
Bra036629.1-P	Field mustard	mitochondrion	13.89	21.8
Bra033321.1-P	Field mustard	mitochondrion	14.55	21.16
Os10t0501200-00	Rice	mitochondrion	17.49	20.93
TraesCS1A01G168700.1	Wheat	mitochondrion	16.02	20.55
Bra027226.1-P	Field mustard	plastid	14.55	18.11
Bra031586.1-P	Field mustard	mitochondrion	11.88	16.76
Bra003559.1-P	Field mustard	cytosol	12.82	13.48
Bra026128.1-P	Field mustard	cytosol	12.95	10.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra001400	EnsemblPlants:Bra001400.1	EnsemblPlants:Bra001400.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002885
InterPro:IPR011990	UniProt:M4CB21	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002540715
SEG:seg	:	:	:	:	:

Description

AT1G28020 (E=3e-122) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:+:16186944..16189193

Molecular Weight (calculated)

86572.4 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.385

Length

749 amino acids

Sequence
(BLAST)

001: MMSHNLQHHT RSILAHSSRT LLFCSYTNGT LPSSPRHSTT TLHSRIEAAS EGKTAITRVL EQWRRQQKGK QINPSMVRVL VEELRDSQRF RQALEVSDWM
101: IEHKLCNLIH EDFTARFCLI ENVLGLKEAE KFFESVPENQ RGEAIYTALL NCYTVKKDLV KAEGTFKNMR EIGLLLKPLP YNSMMSLYFS VRKRDKVDEI
201: MREMKENNVQ FDTLTVNIAL RVYASVSDLL AMEKLLAHWE GTITLHCLTS LDMAKAYLRN GSKVKAREML LRTEEDHIDH ESYAELLTLY GEAGEREDVY
301: RIWDLYKMTE KQDNDGFRAL FGSLLKLDDL NGAEEIYYNE WDGSGLDFDV RIPTILASGY REKGLVKKAD KLMIKTIRNE KMVRPIGQLL EEWGKKGNLV
401: EPSYMRELIK DLCDSKQYPK ALEASTWVSE RNLFALFPED YAARLHLIDN VLGLEQAEKF FNCSITENMK NYSVYSTLLT TYTRSSKTVD KAEATFEKME
501: ELGFLLNSTP FNSVISLYSE MRKRSKVMKL LEKMKEKNIE PDNVIMNHVL RVNAYVSAME CMEKYKREWE ENNLKLEVRT MDAIAKAYEA EGSILKAIEI
601: TSSKKEVYRL WDAYKKDNVG DMSNEGYRSV IRSLLKLDDV KGAQEIFNEW EPERYEFDSR IPSLLISRYC EEEKYNEVKT RDVMKLSRKK RRGLQFELFK
701: DVCVILTATS FGVGFVPCMV SLCGGETITV WGSLAVVVTG IVLAVTNSF

Best Arabidopsis Sequence Match ( AT3G11380.1 )
(BLAST)

001: MSMRHNLQRH AKRILAYSNR PRFFCSYTNV TLSSPATNQT LQSRIEAASH QKAEITTVLE QWLQQQQQQG KQLNPSLLRG IVEKLRSSNR PRQALEVSDW
101: MVEQKMYNLP EDFSARFHLT EKVLNLEEAE KFFESIPENM RFESMYNSLL RSYARQSGEK ALKKAESVFK KMKKLGLLLR PSPYNSMTSL YSSLGNRDKV
201: DEILREMKEN NVELDNVTVN NALRVYAAVS DVATMDKFLA DRKEITRLDG LTMLAMAKAY ELMSLYGEAG EIEDVHRVWD KYKATRQKDN EEFRTLIGSL
301: LKLGDTKGAE KIYYNEWECS GLEFDNRIPD MLVSGYREKG MVMKADKLVN KTLWIRGLAT PITLLLEEMD KKGNKVSPPG LRDLIKNLRD SNQLSKALEA
401: STWMCQKKVF NLFSEDYATR LHLTEKVLGL EEAENFFESS IPENMKDYSV YDTLLSCYAR SSNTQSKAEA VFEKMRELGL QSKLSPFNSL ISLYSGQGKL
501: SVVNILLCDM KHKNIEPDIV TRNNVLRANA YILAIDSMEK V

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.