Factsheet for Bra036629.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19721	Canola	mitochondrion	97.27	97.27
Bra020588.1-P	Field mustard	mitochondrion	79.45	77.19
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	75.68	73.52
KRH52991	Soybean	mitochondrion	54.72	52.62
VIT_18s0001g07000.t01	Wine grape	mitochondrion	54.09	51.39
PGSC0003DMT400004477	Potato	plastid	47.59	47.19
Solyc01g081320.2.1	Tomato	plastid	48.01	44.21
KRH62276	Soybean	mitochondrion	52.83	43.83
TraesCS6B01G391300.1	Wheat	mitochondrion	45.49	42.05
GSMUA_Achr7P12830_001	Banana	mitochondrion	47.59	41.73
Os02t0796400-00	Rice	mitochondrion	44.86	41.39
TraesCS6D01G341400.1	Wheat	mitochondrion	45.07	41.35
HORVU6Hr1G085430.2	Barley	mitochondrion	45.49	41.02
TraesCS6A01G358600.1	Wheat	mitochondrion	44.44	41.01
EES07683	Sorghum	mitochondrion	45.28	40.99
Zm00001d052030_P001	Maize	plastid	44.03	40.0
Zm00001d011182_P001	Maize	endoplasmic reticulum	32.08	31.1
Bra033215.1-P	Field mustard	mitochondrion	28.72	26.76
Bra018528.1-P	Field mustard	mitochondrion	28.72	26.65
Bra027131.1-P	Field mustard	mitochondrion	27.25	26.48
Bra038762.1-P	Field mustard	mitochondrion	26.62	26.02
Bra031484.1-P	Field mustard	mitochondrion	26.62	25.81
Bra033321.1-P	Field mustard	mitochondrion	27.04	25.05
Bra011054.1-P	Field mustard	mitochondrion	17.82	24.93
Bra036673.1-P	Field mustard	mitochondrion	24.95	24.9
Bra028632.1-P	Field mustard	mitochondrion	20.96	24.75
Bra000902.1-P	Field mustard	mitochondrion	25.16	23.95
Bra036496.1-P	Field mustard	plastid	20.75	20.41
Bra031586.1-P	Field mustard	mitochondrion	21.8	19.59
Bra032862.1-P	Field mustard	mitochondrion	15.3	19.26
Bra032863.1-P	Field mustard	mitochondrion	15.51	18.5
Bra027226.1-P	Field mustard	plastid	21.38	16.94
Bra003559.1-P	Field mustard	cytosol	23.27	15.59
Bra032865.1-P	Field mustard	cytosol	18.66	15.51
Bra001400.1-P	Field mustard	mitochondrion, plastid	21.8	13.89
Bra026128.1-P	Field mustard	cytosol	22.22	11.39
Bra032866.1-P	Field mustard	mitochondrion	14.47	10.81

Protein Annotations

EnsemblPlants:Bra036629.1	EnsemblPlants:Bra036629.1-P	EnsemblPlantsGene:Bra036629	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0002541DD5	UniProt:M4F6C0	MapMan:35.1	:

Description

AT5G27460 (E=6e-183) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:2079302..2080805

Molecular Weight (calculated)

54334.2 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.121

Length

477 amino acids

Sequence
(BLAST)

001: MYSRIRLATK TSFSISGVTR LLSSGAATAT LKEILRNNSV PSLLQQRVDS GHPVTLSELR FISNRLIRSN RHDLALQMME WMETRKDVNF SAHDASLKLE
101: LIIKAHGLKQ AEEYFEQLQS SVSAARSAYL PLLRGYVKAR LVQEAEALME KLNLLGFLVT PHPFNEMMKL YEATHQYEKV VMVIGLMKRN KIPRNVLSYN
201: LWMNACCEAS GVGAVESVYG EMVGDRSVEV GWSSLCSLGN VYVKVGFVEK AKLVLESAEK KLSRSNRLGY FFLITMYASL GDKEGVVRLW EGSKSVSGRI
301: TCANYICVLS CLVRLGGLAE AERVFEEWED NCCNYDVRVS NVLLGAYTRN GLIREAESLH NRVLERGGSP NYKTWEILME GWVECQSMEK AIDAMHRAFE
401: LMKGCHWRPS QRIILAIAEY FEKEEKIEEA NIYVRDLHLL GLASLPLYRL LLRMHEHVRR PASHIYEMMK LDNIRIG

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.