CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036629.1-P	Field mustard	mitochondrion	97.27	97.27
CDX99984	Canola	mitochondrion	90.99	90.8
CDY25035	Canola	mitochondrion, plastid	80.29	78.16
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	77.15	74.95
CDY05574	Canola	mitochondrion	80.08	72.9
KRH52991	Soybean	mitochondrion	54.72	52.62
VIT_18s0001g07000.t01	Wine grape	mitochondrion	54.09	51.39
PGSC0003DMT400004477	Potato	plastid	48.01	47.61
Solyc01g081320.2.1	Tomato	plastid	48.22	44.4
KRH62276	Soybean	mitochondrion	52.62	43.65
TraesCS6B01G391300.1	Wheat	mitochondrion	45.28	41.86
GSMUA_Achr7P12830_001	Banana	mitochondrion	47.38	41.54
TraesCS6D01G341400.1	Wheat	mitochondrion	45.28	41.54
TraesCS6A01G358600.1	Wheat	mitochondrion	44.65	41.2
Os02t0796400-00	Rice	mitochondrion	44.65	41.2
EES07683	Sorghum	mitochondrion	45.28	40.99
HORVU6Hr1G085430.2	Barley	mitochondrion	45.28	40.83
Zm00001d052030_P001	Maize	plastid	44.03	40.0
Zm00001d011182_P001	Maize	endoplasmic reticulum	31.87	30.89
CDY46999	Canola	mitochondrion	28.72	27.9
CDX96239	Canola	mitochondrion	28.72	27.9
CDY24553	Canola	mitochondrion	16.77	27.78
CDY50358	Canola	cytosol	13.63	27.66
CDX97288	Canola	mitochondrion	29.56	27.43
CDX91277	Canola	mitochondrion	29.77	27.36
CDY15126	Canola	cytosol, mitochondrion, plastid	28.93	26.95
CDX90079	Canola	mitochondrion	28.93	26.95
CDY35213	Canola	cytosol	2.31	26.83
CDY34141	Canola	mitochondrion	27.67	26.83
CDX98698	Canola	mitochondrion	27.25	26.64
CDY15237	Canola	mitochondrion	28.3	26.32
CDX89976	Canola	mitochondrion	28.09	26.02
CDY03299	Canola	mitochondrion	25.37	25.58
CDY39781	Canola	mitochondrion	25.58	25.52
CDY50357	Canola	mitochondrion	10.69	25.5
CDY65573	Canola	mitochondrion	19.71	25.41
CDY44801	Canola	mitochondrion	21.38	25.25
CDX91822	Canola	mitochondrion	26.21	25.0
CDX90962	Canola	mitochondrion	26.0	24.75
CDY35212	Canola	mitochondrion	14.05	23.84
CDY27645	Canola	mitochondrion	12.16	22.39
CDY24554	Canola	cytosol	6.92	21.57
CDY71968	Canola	plastid	13.0	21.23
CDY05786	Canola	plastid	20.75	20.41
CDY31943	Canola	plastid	20.55	20.21
CDY06272	Canola	mitochondrion	22.01	19.81
CDY09903	Canola	mitochondrion	21.8	19.62
CDY27647	Canola	mitochondrion	15.93	18.67
CDY00734	Canola	mitochondrion	6.92	18.64
CDY57695	Canola	mitochondrion	23.27	18.41
CDX94049	Canola	cytosol	26.83	18.23
CDY39654	Canola	mitochondrion	22.85	18.14
CDY36566	Canola	mitochondrion	22.43	17.8
CDY48421	Canola	mitochondrion	15.3	17.68
CDX97686	Canola	plastid	22.43	17.26
CDY30088	Canola	plastid	22.01	17.02
CDY53325	Canola	mitochondrion	20.55	14.04
CDY53324	Canola	mitochondrion, plastid	21.38	13.95
CDX73880	Canola	mitochondrion	13.21	12.57
CDY66759	Canola	cytosol	18.24	11.65
CDX79395	Canola	cytosol	22.64	10.54
CDY36565	Canola	cytosol	1.26	1.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078G314	EnsemblPlants:CDY19721	ProteinID:CDY19721	ProteinID:CDY19721.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00009455001	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDB437	SEG:seg

Description

BnaA09g03740DBnaA09g03740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G314]

Coordinates

chrLK032100:-:82692..84404

Molecular Weight (calculated)

54395.3 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.161

Length

477 amino acids

Sequence
(BLAST)

001: MYSRIRLATK TSFSISGVTR LLSSGAATAT LKEILRNNSV PSLLQQRVDS GHPVTLSELR FISKRLIRSN RHDLALQMME WMETRKDVNF SAHDASLKLE
101: LIIKAHGLKQ AEEYFEQLQS SVSAARSAYL PLLRGYVKGR LVQEAEALME KLNLLGFLVT PHPFNEMMKL YEATRQYEKV VMVIGLMKRN KIPRNVLSYN
201: LWMNACCEAS GVGAVESVYG EMVGDRSVEV GWSSLCSLGN VYVKVGFVEK AKLVLESAEK KLNRSNRLGY FFLITMYASL GDKEGVVRLW EGSKSVSGRV
301: TCANYICVLS SLVKLGDLAE AERVFEEWEE NCCNYDVRVS NVLLGAYTRN GLIREAESLH NRVLERGGSP NYKTWEILME GWVKCQSMEK AIDAMHRAFE
401: LMKGCHWRPS QRIVLAIAEY FEKEEKIEEA SIYVRDLHRL GLASLPLYRL LLRMHEHVRR PASHIYEMMK LDNIRIG

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.