CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027226.1-P	Field mustard	plastid	92.71	95.02
CDX97686	Canola	plastid	92.22	91.77
AT3G15590.2	Thale cress	cytosol, mitochondrion	74.72	75.57
KRH66764	Soybean	cytosol	32.41	48.19
GSMUA_Achr5P27560_001	Banana	cytosol	37.12	44.64
KRH31614	Soybean	mitochondrion	43.11	44.33
KRH69049	Soybean	mitochondrion	43.6	44.17
GSMUA_Achr8P21680_001	Banana	mitochondrion	42.14	42.07
CDY57695	Canola	mitochondrion	40.84	41.79
KRG95098	Soybean	mitochondrion	40.36	40.82
CDY36566	Canola	mitochondrion	39.71	40.77
Solyc12g020050.1.1	Tomato	plastid	41.17	40.71
PGSC0003DMT400022632	Potato	mitochondrion	41.17	40.71
CDY39654	Canola	mitochondrion	39.38	40.43
VIT_08s0007g05090.t01	Wine grape	mitochondrion	40.52	40.06
PGSC0003DMT400021596	Potato	mitochondrion	38.25	38.5
HORVU3Hr1G040710.1	Barley	mitochondrion	37.28	37.58
GSMUA_Achr11P...	Banana	mitochondrion	37.93	37.26
TraesCS3D01G195000.1	Wheat	mitochondrion	36.95	37.19
TraesCS3B01G220600.2	Wheat	mitochondrion	36.95	37.19
TraesCS3A01G191200.1	Wheat	mitochondrion	36.63	36.93
Os01t0280400-00	Rice	mitochondrion	36.14	36.5
Os12t0170100-01	Rice	mitochondrion	35.01	35.35
OQU86720	Sorghum	mitochondrion	34.85	35.07
Zm00001d008224_P002	Maize	mitochondrion	34.85	34.57
Zm00001d040475_P001	Maize	mitochondrion	34.2	34.42
CDY50357	Canola	mitochondrion	8.59	26.5
CDY24553	Canola	mitochondrion	12.32	26.39
CDY00734	Canola	mitochondrion	7.46	25.99
CDX79395	Canola	cytosol	40.68	24.49
CDY03299	Canola	mitochondrion	18.48	24.1
CDY39781	Canola	mitochondrion	18.31	23.64
CDY46999	Canola	mitochondrion	18.64	23.42
CDY35212	Canola	mitochondrion	10.53	23.13
CDX96239	Canola	mitochondrion	18.31	23.01
CDY65573	Canola	mitochondrion	13.61	22.7
CDY34141	Canola	mitochondrion	17.99	22.56
CDY19721	Canola	mitochondrion	17.02	22.01
CDY25035	Canola	mitochondrion, plastid	17.34	21.84
CDX99984	Canola	mitochondrion	16.86	21.76
CDY09903	Canola	mitochondrion	18.31	21.32
CDX98698	Canola	mitochondrion	16.86	21.31
CDX91277	Canola	mitochondrion	17.83	21.19
CDY06272	Canola	mitochondrion	18.15	21.13
CDX97288	Canola	mitochondrion	17.5	21.01
CDX91822	Canola	mitochondrion	16.86	20.8
CDX90962	Canola	mitochondrion	16.69	20.56
CDY05574	Canola	mitochondrion	16.86	19.85
CDY24554	Canola	cytosol	4.86	19.61
CDY44801	Canola	mitochondrion	12.8	19.55
CDY35213	Canola	cytosol	1.3	19.51
CDY15126	Canola	cytosol, mitochondrion, plastid	15.72	18.95
CDX89976	Canola	mitochondrion	15.56	18.64
CDY27645	Canola	mitochondrion	7.78	18.53
CDX90079	Canola	mitochondrion	15.23	18.36
CDY15237	Canola	mitochondrion	15.23	18.32
CDY50358	Canola	cytosol	6.97	18.3
CDY71968	Canola	plastid	8.27	17.47
CDY31943	Canola	plastid	13.61	17.32
CDY05786	Canola	plastid	13.45	17.11
CDY27647	Canola	mitochondrion	10.7	16.22
CDX94049	Canola	cytosol	16.86	14.81
CDY48421	Canola	mitochondrion	9.56	14.29
CDY53325	Canola	mitochondrion	15.88	14.04
CDY53324	Canola	mitochondrion, plastid	16.21	13.68
CDY66759	Canola	cytosol	15.4	12.72
CDX73880	Canola	mitochondrion	8.75	10.78
CDY36565	Canola	cytosol	1.3	2.39

Protein Annotations

EnsemblPlants:CDY30088	EnsemblPlantsGene:GSBRNA2T00044644001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1592
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY30088	ProteinID:CDY30088.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EE1D5D	UniProt:A0A078GZS6	MapMan:16.12.5.4.19	:	:	:

Description

BnaC05g37740DBnaC05g37740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZS6]

Coordinates

chrLK032249:-:4376..6704

Molecular Weight (calculated)

70297.0 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.386

Length

617 amino acids

Sequence
(BLAST)

001: MYSISKILRR SSRFNLAPSS FGAVSKLEIS IGTKESAFRA SGLNFSNQSQ GLVRRYSVRD VFSRFIGINK LSSVADVKGD EEEKEAFPVS GDAAEGVEDD
101: SVFDSELGSD IEDARDDGLE VEVEHSNKGK AKRTRARCEL YDSIVAYKSV KHVLEQWVKE GKDLSQAEVS LAVHNLRKRR SYAMCLQLWE WLRANTQFEF
201: TEANYASQLD LVAKVHSLQK AEAFLNDIPE SSRGEVVYRT LLANCVLKLH VKRAEDLFNK MRELKFPTSV FACNQLLLLY SKHDRKKIPD VLLLMEKENI
301: KPTRGTYQFL INSKGLSGDI AGMDKLVETM KEEGIKLDPE IQAAVARYYM RAGRKERAEE VMKEIEGEGL EQAPWVCRSL LPLYAEIGDK ENVRRLSRFV
401: EQALRYDNSI AAIKAWGKLK EIEEAEAVFD KLVEKYKLVP MLPYFSLMEI YTENKMLTKG KNLVKRIASA GVKIGPSTWH ALVKLYIKAG EVGKAEMILN
501: KATKDNKMRP LFVSYMVILE EYAKRGDVHN AEKVFLRMKR AGYAAQLMQY ETVLLAYVNA KTPAYGMSER MKVDNVFPNK SLAAKLAQRT TRLERRGRVV
601: HEFGKKILRN WAAKYFN

Best Arabidopsis Sequence Match ( AT3G15590.2 )
(BLAST)

001: MYSLSRILQR SQRYNFAPSS FGAVSKLEVS SGGDKERVFK SFGLIYSKPQ GLVRLYSARD VFSRFFGIHK LSSIADAKDK GDEVVREEEL SESEEAVPVS
101: GDVPEGVVDD DSLFEPELGS DNDDLEIEEK HSKDGGKPTK KRGQSELYES IVAYKSVKHV LEKWVKEGKD LSQAEVTLAI HNLRKRKSYA MCLQLWEWLG
201: ANTQFEFTEA NYASQLDLVA KVHSLQKAEI FLKDIPESSR GEVVYRTLLA NCVLKHHVNK AEDIFNKMKE LKFPTSVFAC NQLLLLYSMH DRKKISDVLL
301: LMERENIKPS RATYHFLINS KGLAGDITGM EKIVETIKEE GIELDPELQS ILAKYYIRAG LKERAQDLMK EIEGKGLQQT PWVCRSLLPL YADIGDSDNV
401: RRLSRFVDQN PRYDNCISAI KAWGKLKEVE EAEAVFERLV EKYKIFPMMP YFALMEIYTE NKMLAKGRDL VKRMGNAGIA IGPSTWHALV KLYIKAGEVG
501: KAELILNRAT KDNKMRPMFT TYMAILEEYA KRGDVHNTEK VFMKMKRASY AAQLMQYETV LLAYINAKTP AYGMIERMKA DNVFPNKSLA AKLAQVNPFK
601: KCPVSVLLDI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g15590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.