CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027226.1-P	Field mustard	plastid	94.19	97.01
CDY30088	Canola	plastid	91.77	92.22
AT3G15590.2	Thale cress	cytosol, mitochondrion	75.32	76.56
KRH66764	Soybean	cytosol	32.42	48.43
GSMUA_Achr5P27560_001	Banana	cytosol	37.26	45.03
KRH69049	Soybean	mitochondrion	43.55	44.34
KRH31614	Soybean	mitochondrion	42.9	44.33
GSMUA_Achr8P21680_001	Banana	mitochondrion	42.42	42.56
CDY57695	Canola	mitochondrion	41.13	42.29
CDY36566	Canola	mitochondrion	40.48	41.76
CDY39654	Canola	mitochondrion	39.84	41.1
PGSC0003DMT400022632	Potato	mitochondrion	41.13	40.87
Solyc12g020050.1.1	Tomato	plastid	41.13	40.87
KRG95098	Soybean	mitochondrion	40.0	40.66
VIT_08s0007g05090.t01	Wine grape	mitochondrion	40.81	40.54
PGSC0003DMT400021596	Potato	mitochondrion	38.06	38.5
HORVU3Hr1G040710.1	Barley	mitochondrion	37.58	38.07
TraesCS3B01G220600.2	Wheat	mitochondrion	37.26	37.68
TraesCS3D01G195000.1	Wheat	mitochondrion	37.26	37.68
Os01t0280400-00	Rice	mitochondrion	36.94	37.48
TraesCS3A01G191200.1	Wheat	mitochondrion	36.94	37.42
GSMUA_Achr11P...	Banana	mitochondrion	37.74	37.26
Os12t0170100-01	Rice	mitochondrion	35.81	36.33
OQU86720	Sorghum	mitochondrion	35.65	36.05
Zm00001d040475_P001	Maize	mitochondrion	35.0	35.4
Zm00001d008224_P002	Maize	mitochondrion	35.32	35.21
CDY24553	Canola	mitochondrion	12.42	26.74
CDY50357	Canola	mitochondrion	8.55	26.5
CDY00734	Canola	mitochondrion	7.42	25.99
CDX79395	Canola	cytosol	40.97	24.78
CDY03299	Canola	mitochondrion	18.55	24.31
CDY46999	Canola	mitochondrion	19.03	24.03
CDY39781	Canola	mitochondrion	18.39	23.85
CDX96239	Canola	mitochondrion	18.71	23.63
CDY34141	Canola	mitochondrion	18.39	23.17
CDY35212	Canola	mitochondrion	10.48	23.13
CDY65573	Canola	mitochondrion	13.71	22.97
CDY19721	Canola	mitochondrion	17.26	22.43
CDY25035	Canola	mitochondrion, plastid	17.58	22.24
CDX99984	Canola	mitochondrion	16.94	21.97
CDX91277	Canola	mitochondrion	18.23	21.77
CDX98698	Canola	mitochondrion	17.1	21.72
CDX91822	Canola	mitochondrion	17.42	21.6
CDX97288	Canola	mitochondrion	17.9	21.6
CDX90962	Canola	mitochondrion	17.26	21.36
CDY06272	Canola	mitochondrion	18.06	21.13
CDY09903	Canola	mitochondrion	18.06	21.13
CDY05574	Canola	mitochondrion	17.26	20.42
CDY24554	Canola	cytosol	5.0	20.26
CDY44801	Canola	mitochondrion	13.06	20.05
CDY35213	Canola	cytosol	1.29	19.51
CDX89976	Canola	mitochondrion	16.13	19.42
CDY15126	Canola	cytosol, mitochondrion, plastid	15.97	19.34
CDY27645	Canola	mitochondrion	8.06	19.3
CDY50358	Canola	cytosol	7.26	19.15
CDY15237	Canola	mitochondrion	15.65	18.91
CDX90079	Canola	mitochondrion	15.48	18.75
CDY71968	Canola	plastid	8.39	17.81
CDY31943	Canola	plastid	13.87	17.73
CDY05786	Canola	plastid	13.71	17.53
CDY27647	Canola	mitochondrion	11.13	16.95
CDX94049	Canola	cytosol	17.1	15.1
CDY48421	Canola	mitochondrion	10.0	15.01
CDY53325	Canola	mitochondrion	16.29	14.47
CDY53324	Canola	mitochondrion, plastid	16.77	14.23
CDY66759	Canola	cytosol	15.48	12.85
CDX73880	Canola	mitochondrion	9.19	11.38
CDY36565	Canola	cytosol	1.29	2.39

Protein Annotations

EnsemblPlants:CDX97686	EnsemblPlantsGene:GSBRNA2T00104931001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1592
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX97686	ProteinID:CDX97686.1	SEG:seg
UniParc:UPI0004EEFD81	MapMan:16.12.5.4.19	:	:	:	:

Description

BnaA05g23930D

Coordinates

chrLK031900:-:982186..984310

Molecular Weight (calculated)

70453.4 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.319

Length

620 amino acids

Sequence
(BLAST)

001: MYSISKILRR SSRFSLALSS FGAVSKLEIP TGTKESVFRA SGLNFSNQSQ GLVRRYSVRD VFSRFIGINK LSSVADVKGD EEEKEAFPVS RDVAEGVEDD
101: SVFDSELGSD SEACDDDLEV EVEHSNKGKA KKTRGRCELY DSIVAYKSVK HVLEQWVKEG KDLSQAEVSL AVHNLRKRRS YAMCLQLWEW LRANTQFEFT
201: EANYASQLDL VAKVHSLQKA EAFLNDIPES SRGEVVYRTL LANCVLKLHV KRAEDLFNKM RELKFPTSVF ACNQLLLLYS KHDRKKIPDV LLLMEKENIK
301: PTRGTYQFLI NSKGLSGDIA GMEKLVETMK EEGIKLDPEI QAAVARYYIR AGRKERAEEV MKEIEGEGLD QAPWVCRSLL PLYAEIGDKE NVRRLSRFVE
401: QALRYDNSIA AIKAWGKLKE IEEAEAVFDK LVEKYKLVPM LPYFSLMEIY TENKMLTKGK NLVKRIASAG VKIGPSTWHA LVKLYIKAGE VGKAEMILNK
501: ATKDNKMRPL FISYMVILEE YAKRGDVHNA EKVFMRMKRA GYAAQLMQYE TVLLAYVNAK TPAYGMNERM KVDNVFPNKS LAAKLAHVDP KIRDVEKVFI
601: SLQRGLSETG LLNILISPMY

Best Arabidopsis Sequence Match ( AT3G15590.2 )
(BLAST)

001: MYSLSRILQR SQRYNFAPSS FGAVSKLEVS SGGDKERVFK SFGLIYSKPQ GLVRLYSARD VFSRFFGIHK LSSIADAKDK GDEVVREEEL SESEEAVPVS
101: GDVPEGVVDD DSLFEPELGS DNDDLEIEEK HSKDGGKPTK KRGQSELYES IVAYKSVKHV LEKWVKEGKD LSQAEVTLAI HNLRKRKSYA MCLQLWEWLG
201: ANTQFEFTEA NYASQLDLVA KVHSLQKAEI FLKDIPESSR GEVVYRTLLA NCVLKHHVNK AEDIFNKMKE LKFPTSVFAC NQLLLLYSMH DRKKISDVLL
301: LMERENIKPS RATYHFLINS KGLAGDITGM EKIVETIKEE GIELDPELQS ILAKYYIRAG LKERAQDLMK EIEGKGLQQT PWVCRSLLPL YADIGDSDNV
401: RRLSRFVDQN PRYDNCISAI KAWGKLKEVE EAEAVFERLV EKYKIFPMMP YFALMEIYTE NKMLAKGRDL VKRMGNAGIA IGPSTWHALV KLYIKAGEVG
501: KAELILNRAT KDNKMRPMFT TYMAILEEYA KRGDVHNTEK VFMKMKRASY AAQLMQYETV LLAYINAKTP AYGMIERMKA DNVFPNKSLA AKLAQVNPFK
601: KCPVSVLLDI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g15590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.