CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033215.1-P	Field mustard	mitochondrion	99.8	99.8
CDY15126	Canola	cytosol, mitochondrion, plastid	97.46	97.46
AT1G02150.1	Thale cress	mitochondrion	90.43	88.36
VIT_15s0021g01300.t01	Wine grape	plastid	61.33	59.58
Solyc01g089870.2.1	Tomato	nucleus	58.98	55.41
PGSC0003DMT400080049	Potato	cytosol, plastid	58.98	55.41
KRH48889	Soybean	plastid	58.4	54.76
KRH66454	Soybean	plastid	58.01	53.51
GSMUA_AchrUn_...	Banana	cytosol	36.52	50.13
Zm00001d002789_P001	Maize	plastid	41.41	41.33
EES12592	Sorghum	plastid	41.41	41.16
Os04t0544400-00	Rice	plastid	40.62	40.7
TraesCS2A01G391600.1	Wheat	plastid	39.65	40.36
TraesCS2B01G410100.1	Wheat	plastid	39.65	39.96
TraesCS2D01G389900.1	Wheat	plastid	39.84	39.92
HORVU2Hr1G093220.7	Barley	mitochondrion	39.84	38.93
CDY24553	Canola	mitochondrion	17.97	31.94
CDY50357	Canola	mitochondrion	12.11	31.0
CDX99984	Canola	mitochondrion	27.54	29.5
CDY35213	Canola	cytosol	2.34	29.27
CDX91822	Canola	mitochondrion	28.32	29.0
CDY03299	Canola	mitochondrion	26.76	28.96
CDX90962	Canola	mitochondrion	28.32	28.94
CDY19721	Canola	mitochondrion	26.95	28.93
CDY39781	Canola	mitochondrion	26.95	28.87
CDY15237	Canola	mitochondrion	28.71	28.66
CDX89976	Canola	mitochondrion	28.71	28.54
CDX96239	Canola	mitochondrion	27.15	28.31
CDY34141	Canola	mitochondrion	27.15	28.25
CDY25035	Canola	mitochondrion, plastid	26.95	28.16
CDY65573	Canola	mitochondrion	20.31	28.11
CDY46999	Canola	mitochondrion	26.95	28.11
CDX98698	Canola	mitochondrion	26.37	27.66
CDX91277	Canola	mitochondrion	27.93	27.55
CDX97288	Canola	mitochondrion	27.54	27.43
CDY35212	Canola	mitochondrion	14.84	27.05
CDY05574	Canola	mitochondrion	27.54	26.91
CDY71968	Canola	plastid	15.23	26.71
CDY27645	Canola	mitochondrion	13.48	26.64
CDY00734	Canola	mitochondrion	8.98	25.99
CDY44801	Canola	mitochondrion	20.31	25.74
CDY50358	Canola	cytosol	10.55	22.98
CDY48421	Canola	mitochondrion	17.77	22.03
CDY27647	Canola	mitochondrion	17.38	21.87
CDY05786	Canola	plastid	19.34	20.41
CDY31943	Canola	plastid	19.34	20.41
CDY09903	Canola	mitochondrion	20.9	20.19
CDY06272	Canola	mitochondrion	20.51	19.81
CDY24554	Canola	cytosol	5.86	19.61
CDX94049	Canola	cytosol	26.76	19.52
CDY39654	Canola	mitochondrion	20.7	17.64
CDY57695	Canola	mitochondrion	20.12	17.08
CDY36566	Canola	mitochondrion	19.92	16.97
CDY53324	Canola	mitochondrion, plastid	23.44	16.42
CDY53325	Canola	mitochondrion	22.07	16.19
CDX73880	Canola	mitochondrion	15.23	15.57
CDX97686	Canola	plastid	18.75	15.48
CDY30088	Canola	plastid	18.36	15.23
CDY66759	Canola	cytosol	19.73	13.52
CDX79395	Canola	cytosol	19.92	9.95
CDY36565	Canola	cytosol	1.37	2.09

Protein Annotations

EnsemblPlants:CDX90079	EnsemblPlantsGene:GSBRNA2T00150590001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX90079	ProteinID:CDX90079.1	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0004EE9F4D	MapMan:35.1	:	:	:

Description

BnaA10g00030D

Coordinates

chrLK031861:+:1570861..1572685

Molecular Weight (calculated)

58601.7 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.368

Length

512 amino acids

Sequence
(BLAST)

001: MLLQAVQNRN VPLASSASYS RLPRCRSPVV SVAPLKKKTA IIVCSISQVY GYGTVDYERR PIIQWNAIYK KISLMEKPEL GAASVLNQWE KGGRKLTKWE
101: LCRVVKELRK YKRPNQALEV YDWMNKRGER FRLSASDAAI QLDLIGKVRG ISDAEEFFLS LPDNFKDRRV YGSLLNAYVR AKSREKAEAL IDIMRQKGYA
201: LHPLPFNVMM TLYMNLREYD KVDAMVFEMK QKDIRLDIYS YNIWLSSCAS VEQMEQVYQQ MKSDVSINPN WTTFSTMATM YIKMGEPEKA QDALRKVEAR
301: ITGRNRIPYH YLLSLYGSVG NKKELFRVWN VYKSVVPSIP NLGYHALVSS LVRMGDVEAA EKVYEEWLPV KSSYDPRIPN LLMNVYVKND QLDKAEGLFD
401: HMIEMGGKPS PGTWEILADG HTRKRSITEA LACLKEAFSA QGSSNWRPKV LVLSGFFKLC EEESDVTSKE TVLELLSQSG HLQDKSYQAL IDADENDAHD
501: TDVLVTQLQD DL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.