Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G391600.1 | Wheat | plastid | 96.28 | 97.81 |
| TraesCS2B01G410100.1 | Wheat | plastid | 95.69 | 96.26 |
| HORVU2Hr1G093220.7 | Barley | mitochondrion | 94.72 | 92.37 |
| Os04t0544400-00 | Rice | plastid | 82.19 | 82.19 |
| EES12592 | Sorghum | plastid | 78.47 | 77.86 |
| Zm00001d002789_P001 | Maize | plastid | 77.3 | 77.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.9 | 56.03 |
| VIT_15s0021g01300.t01 | Wine grape | plastid | 44.62 | 43.26 |
| AT1G02150.1 | Thale cress | mitochondrion | 41.1 | 40.08 |
| PGSC0003DMT400080049 | Potato | cytosol, plastid | 42.66 | 40.0 |
| Bra033215.1-P | Field mustard | mitochondrion | 39.92 | 39.84 |
| CDX90079 | Canola | mitochondrion | 39.92 | 39.84 |
| KRH48889 | Soybean | plastid | 42.47 | 39.74 |
| CDY15126 | Canola | cytosol, mitochondrion, plastid | 39.73 | 39.65 |
| KRH66454 | Soybean | plastid | 43.05 | 39.64 |
| Solyc01g089870.2.1 | Tomato | nucleus | 42.07 | 39.45 |
| TraesCS5D01G112000.1 | Wheat | mitochondrion | 30.14 | 30.2 |
| TraesCS1D01G166800.1 | Wheat | mitochondrion | 28.96 | 28.96 |
| TraesCS6D01G079300.1 | Wheat | mitochondrion | 27.59 | 27.7 |
| TraesCS7D01G056000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.96 | 27.56 |
| TraesCS6D01G079100.1 | Wheat | mitochondrion | 25.64 | 27.35 |
| TraesCS1D01G166700.1 | Wheat | mitochondrion | 26.42 | 27.27 |
| TraesCS6D01G341400.1 | Wheat | mitochondrion | 26.81 | 26.35 |
| TraesCS6D01G079200.1 | Wheat | plastid | 27.4 | 25.88 |
| TraesCS2D01G553100.1 | Wheat | mitochondrion | 27.4 | 25.69 |
| TraesCS2D01G553300.1 | Wheat | mitochondrion | 27.98 | 25.54 |
| TraesCS2D01G315700.1 | Wheat | mitochondrion | 20.74 | 24.04 |
| TraesCS6D01G079400.1 | Wheat | plastid | 20.74 | 23.5 |
| TraesCS7D01G293300.1 | Wheat | mitochondrion | 19.37 | 19.3 |
| TraesCS3D01G195000.1 | Wheat | mitochondrion | 21.53 | 17.94 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:IPR019734 |
| PFAM:PF01535 | PFAM:PF13181 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF27 |
| InterPro:Pentatricopeptide_repeat | SMART:SM00028 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| EnsemblPlantsGene:TraesCS2D01G389900 | EnsemblPlants:TraesCS2D01G389900.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:-:497362398..497364710
Molecular Weight (calculated)
58659.9 Da
IEP (calculated)
8.690
GRAVY (calculated)
-0.467
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLHHLLPPS SRAPSRPSPR RPSVGVAAAF TVRCASSSAQ SLPASSSSLA GQQVANVHSY GTVDFERRPA LRWSSLYRRV AMGHGGRPVG RTLADWDEGE
101: RRLDKWELCR IARELRKFRR FNLALEVYDW MTDRRDRFSL SSSDMAIQLD LIAKVRGVPD AEEYFEKLPD PLKDKRTYGS LLNVYAQARM KEKTEYTFEQ
201: MRKKAFATDT LPFNVLMNFY VDVAEPEKVS TVTDEMKQRN IAFDVCTYNI WIKCCAAMKD ADAMERVFNQ MIADESVVAN WTTYTTLASM HIKLENFEKA
301: EECLKEAEKR ATGRDKKCFH FLITLYSHLQ KKEEVYRIWN WYKATFKTIH NLGYQEVLSA LVRLGDIEGA ELLYEEWASK SSSFDPKTMN ILLAWYSREG
401: FVVKAEQTLN RFVEKGGNPK PNTWEILATA YLKDNQFAES LSCLEKATAV KSASKWRPRP TNVESLLAYF KEKNDTESVD RLMSLLRSRG CAENEEYKSL
501: FDTYALAVAG T
101: RRLDKWELCR IARELRKFRR FNLALEVYDW MTDRRDRFSL SSSDMAIQLD LIAKVRGVPD AEEYFEKLPD PLKDKRTYGS LLNVYAQARM KEKTEYTFEQ
201: MRKKAFATDT LPFNVLMNFY VDVAEPEKVS TVTDEMKQRN IAFDVCTYNI WIKCCAAMKD ADAMERVFNQ MIADESVVAN WTTYTTLASM HIKLENFEKA
301: EECLKEAEKR ATGRDKKCFH FLITLYSHLQ KKEEVYRIWN WYKATFKTIH NLGYQEVLSA LVRLGDIEGA ELLYEEWASK SSSFDPKTMN ILLAWYSREG
401: FVVKAEQTLN RFVEKGGNPK PNTWEILATA YLKDNQFAES LSCLEKATAV KSASKWRPRP TNVESLLAYF KEKNDTESVD RLMSLLRSRG CAENEEYKSL
501: FDTYALAVAG T
001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.