Factsheet for TraesCS1D01G166800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G188100.1	Wheat	mitochondrion	96.67	96.67
TraesCS1A01G168800.1	Wheat	mitochondrion	96.09	96.09
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	93.74	92.29
Os07t0598500-01	Rice	mitochondrion	80.63	81.42
EER91421	Sorghum	mitochondrion	74.36	76.61
EER90330	Sorghum	mitochondrion	72.41	73.71
Zm00001d013923_P001	Maize	mitochondrion	72.02	73.6
EER90329	Sorghum	mitochondrion	66.73	67.79
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.97	53.96
VIT_10s0597g00040.t01	Wine grape	extracellular	47.36	47.83
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	46.97	47.62
KRH10858	Soybean	mitochondrion	44.42	46.71
PGSC0003DMT400032340	Potato	mitochondrion	43.84	46.28
AT4G21705.1	Thale cress	mitochondrion	42.86	44.51
CDX98698	Canola	mitochondrion	42.47	44.47
Bra038762.1-P	Field mustard	mitochondrion	41.88	43.85
KRH55328	Soybean	plastid	41.49	43.09
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	39.73	41.34
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	39.53	41.14
Solyc07g063220.2.1	Tomato	plastid	43.44	40.0
CDX94049	Canola	cytosol	41.68	30.34
TraesCS6D01G079100.1	Wheat	mitochondrion	27.98	29.85
TraesCS6D01G079300.1	Wheat	mitochondrion	29.16	29.27
TraesCS2D01G553100.1	Wheat	mitochondrion	30.92	28.99
TraesCS2D01G389900.1	Wheat	plastid	28.96	28.96
TraesCS1D01G166700.1	Wheat	mitochondrion	27.01	27.88
TraesCS2D01G553300.1	Wheat	mitochondrion	30.33	27.68
TraesCS5D01G112000.1	Wheat	mitochondrion	27.4	27.45
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.57	27.19
TraesCS6D01G079200.1	Wheat	plastid	27.98	26.43
TraesCS6D01G341400.1	Wheat	mitochondrion	26.03	25.58
TraesCS2D01G315700.1	Wheat	mitochondrion	20.74	24.04
TraesCS6D01G079400.1	Wheat	plastid	21.14	23.95
TraesCS3D01G195000.1	Wheat	mitochondrion	22.31	18.6
TraesCS7D01G293300.1	Wheat	mitochondrion	18.59	18.52

Protein Annotations

EnsemblPlants:TraesCS1D01G166800.1	EnsemblPlantsGene:TraesCS1D01G166800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:+:238066008..238068338

Molecular Weight (calculated)

57850.7 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.453

Length

511 amino acids

Sequence
(BLAST)

001: MASSSLFAAG RRLLHLGRGR LLQGRVRPHN PTPLLLPVRA ASSPPSNSAE RPPRRPPGLQ STLWPLGHPD TLLVPEIERW AEKPGNRLRP VELERIVKEL
101: RKRRRHRQAL EVSEWMSAKG HVRFLPKDHA VHLDLIGQVQ GIGAAEAYFN QLPDDDKTEK PYGALLNCYT RELMVDESLA HFQKMKEQGF VFCSLPYNNL
201: MGLYTNIGQH EKVPSVIAEM KRSGIMPDNF SYRICINSYG RRADFFGMEN TLEDMECEPQ IVVDWNTYAV VASNYIKGNL REKAISALKK AEAKIDIKDS
301: DNYNHLISLY GQLGDKSEVK RLWALQMTNC KRHINKDYTT MLAMLVRLDD FEEAEVLLKE WESSENAFDF HVPNVLLTGY RQKDMLDKAE ALLDDFLKKG
401: KMPPSSSWAI VAIGYAEKGD AVKAYELTKN ALCVYAPRSG WIPRPAMIEM ILKYLGDEGD LKDVETFVQL LQAAIPMNSD MTDALSRARM REEKKAGDAE
501: KEALSSTKAS G

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.