Factsheet for TraesCS2D01G315700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G369300.2
TraesCS3B01G401200.2
TraesCS3D01G362300.2
TraesCS6A01G180500.1
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G164600.1
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	TraesCS3A01G369300.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS3B01G401200.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS3D01G362300.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6A01G251200.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6B01G274100.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6D01G233000.5	AT2G44950.1	21798944
AT5G09450.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT5G09450.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G318100.1	Wheat	mitochondrion	90.25	94.99
TraesCS2B01G336200.1	Wheat	mitochondrion	89.57	94.27
HORVU3Hr1G070650.1	Barley	cytosol	27.66	84.14
HORVU2Hr1G079080.2	Barley	cytosol	52.15	83.64
Os04t0450200-01	Rice	cytosol	55.1	83.22
EES10908	Sorghum	mitochondrion	71.88	76.39
HORVU1Hr1G085940.2	Barley	cytosol	28.8	74.71
Zm00001d003500_P001	Maize	mitochondrion	65.31	68.09
GSMUA_Achr10P...	Banana	cytosol	51.93	51.93
VIT_11s0078g00180.t01	Wine grape	cytosol	22.0	50.79
KRH43872	Soybean	mitochondrion	42.4	47.34
Bra028632.1-P	Field mustard	mitochondrion	43.31	47.28
CDY44801	Canola	mitochondrion	43.31	47.28
KRH10583	Soybean	mitochondrion	42.18	46.62
AT5G09450.1	Thale cress	mitochondrion	43.08	46.45
PGSC0003DMT400011461	Potato	mitochondrion	41.5	45.75
Solyc10g047370.1.1	Tomato	mitochondrion	41.27	45.61
TraesCS5D01G112000.1	Wheat	mitochondrion	26.98	23.33
TraesCS6D01G341400.1	Wheat	mitochondrion	25.4	21.54
TraesCS1D01G166800.1	Wheat	mitochondrion	24.04	20.74
TraesCS2D01G389900.1	Wheat	plastid	24.04	20.74
TraesCS6D01G079100.1	Wheat	mitochondrion	22.45	20.67
TraesCS6D01G079300.1	Wheat	mitochondrion	23.13	20.04
TraesCS2D01G553300.1	Wheat	mitochondrion	25.4	20.0
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.9	18.81
TraesCS1D01G166700.1	Wheat	mitochondrion	21.09	18.79
TraesCS6D01G079200.1	Wheat	plastid	22.9	18.67
TraesCS2D01G553100.1	Wheat	mitochondrion	21.77	17.61
TraesCS6D01G079400.1	Wheat	plastid	17.91	17.52
TraesCS7D01G293300.1	Wheat	mitochondrion	18.37	15.79
TraesCS3D01G195000.1	Wheat	mitochondrion	18.82	13.54

Protein Annotations

EnsemblPlants:TraesCS2D01G315700.1	EnsemblPlantsGene:TraesCS2D01G315700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504
PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr2D:+:405272115..405274553

Molecular Weight (calculated)

49015.5 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.207

Length

441 amino acids

Sequence
(BLAST)

001: MYTATTASRL ARAERRGRAH EMAAALLRAA RASRHLALPR SIASSPSQLS SSSSCTASAA ETPSPAAAAP AIPADVEDAV VVVAEEDDLR SHIFRLRLAK
101: RSATEALEKW AGKGRAAPAP ELRRIARDLS RARRYKHALE VAEWMKTHHE SDLSENDYGV RIDLITKVFG ATAAEDFFEK LPPAAKSLEA YTALLHSYAR
201: SKMIDKAERL FQRMKDADLP IDVLVYNEMM TLYISVGELD KVPTLAEELK RQNVSPDLFT YNLRISASVA SMDLEVFRGI LDEMSKDPNS NEGWTLYRNL
301: ASIYVDASQL VSSGNSLVEA EVKISQREWI TYDLLVILQT GLGNLDRVKD IWKSMQMTAQ RMTSRNYVCV LSAYLMCGQL KDAAEVVDQW QRSKVPEFDI
401: SACNRLFDAL LAVGFTDTAD SFRELMLQKS CILSNRASAC S

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.