Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G362300.2 | Wheat | nucleus | 95.98 | 95.98 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 95.63 | 95.63 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 86.67 | 86.07 |
| Os04t0550400-01 | Rice | nucleus | 65.17 | 64.14 |
| EER88892 | Sorghum | cytosol | 58.97 | 60.28 |
| Zm00001d014640_P035 | Maize | cytosol | 58.39 | 59.07 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 25.63 | 58.38 |
| Zm00001d036507_P003 | Maize | cytosol | 56.32 | 56.26 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 54.48 | 53.8 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 28.51 | 49.01 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 47.47 | 47.04 |
| KRH30315 | Soybean | nucleus | 45.4 | 44.94 |
| Solyc11g013370.1.1 | Tomato | nucleus | 43.56 | 44.75 |
| KRH75261 | Soybean | nucleus | 45.06 | 44.55 |
| AT2G44950.1 | Thale cress | nucleus | 41.84 | 41.46 |
| Bra040332.1-P | Field mustard | nucleus | 41.38 | 40.96 |
| CDY37020 | Canola | nucleus | 41.15 | 40.82 |
| CDY27400 | Canola | nucleus | 40.8 | 40.66 |
| CDY18962 | Canola | nucleus | 40.8 | 40.66 |
| CDX74700 | Canola | nucleus | 41.03 | 40.52 |
| Bra004879.1-P | Field mustard | nucleus | 40.92 | 39.38 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 30.57 | 31.52 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| SUPFAM:SSF57997 | EnsemblPlantsGene:TraesCS3B01G401200 | EnsemblPlants:TraesCS3B01G401200.2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd16499 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:635342854..635353697
Molecular Weight (calculated)
99082.6 Da
IEP (calculated)
7.218
GRAVY (calculated)
-0.715
Length
870 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGEPYRK RRLSDSFVSP AKRPALPPSS GDKKLDFAVL KYRNQKLSEQ LAVHKFEYHA LEGKFDDLKQ KQKAHHETQD LANKSWEHLV RDLKAISACK
101: SGFQNPSCSA GPSNVSTDGT CIPKDKDFLS RLVETGATES SGCHLENHVH SSSTDVLQNI LFSSNDSWHA NKKSLLDLFA ALPENERSRE LRTTGTELSL
201: QLNDAIQELS DLHLKHRRLT EKHHEERCLN ARSKAEQKLL KEELASAVAE LEESNHKLAV LKAQGDPTHG TPILFPTLGN KSLPEDNVRD KQKELQDLEA
301: CHKEFTDLIS QRLVEIRRLH EDRIEILNKL STFQNTLMDF KSISSSKAFQ VLKDQLQKSQ AELDHCRMLL EKLQVNKDKL IWQEREVNVK VDLSGIPHRV
401: SLNCESSIAV LEQNRQKVVD EKNMLALKLE ESSREPGRNQ IISEFKALVS SLPGEMGAMQ TELSKYKDDA SELHSLRAEV HSVSDILARK EHTIDESLCR
501: SAHAGSETRG LRSRVCELRQ TNCELKLFVE MYKRDSTDSR DLLESKDGEY CEWAHVHSLK SSLDESRLEQ RVKVAIEAEA MSQQRLASGE AEIAELRGKM
601: ESARRDIGSL SELLKSKHEE GEAYLSEIES IGQAYEDIQT QNQQLLQQII ERDDHNTKIF MEGVKAKQAQ DTLHLEVCNL NRNLRQAKSL MDLYKDKVAQ
701: FDDKLKVWSE QIGRLSEDGR RHSVSSGNAQ RKLVDVQGEV QQLRKSMDEV QAKVGRNRLE VAGLLVELEK DRFSKRRIED DLESMSRKAS SLRVKTEASS
801: LLEKVHQEVN EYRGILKCGV CRDRQKEVVI TKCYHLFCND CIQKLLRNRQ RRCPSCGLSF GANDVKPIYI
101: SGFQNPSCSA GPSNVSTDGT CIPKDKDFLS RLVETGATES SGCHLENHVH SSSTDVLQNI LFSSNDSWHA NKKSLLDLFA ALPENERSRE LRTTGTELSL
201: QLNDAIQELS DLHLKHRRLT EKHHEERCLN ARSKAEQKLL KEELASAVAE LEESNHKLAV LKAQGDPTHG TPILFPTLGN KSLPEDNVRD KQKELQDLEA
301: CHKEFTDLIS QRLVEIRRLH EDRIEILNKL STFQNTLMDF KSISSSKAFQ VLKDQLQKSQ AELDHCRMLL EKLQVNKDKL IWQEREVNVK VDLSGIPHRV
401: SLNCESSIAV LEQNRQKVVD EKNMLALKLE ESSREPGRNQ IISEFKALVS SLPGEMGAMQ TELSKYKDDA SELHSLRAEV HSVSDILARK EHTIDESLCR
501: SAHAGSETRG LRSRVCELRQ TNCELKLFVE MYKRDSTDSR DLLESKDGEY CEWAHVHSLK SSLDESRLEQ RVKVAIEAEA MSQQRLASGE AEIAELRGKM
601: ESARRDIGSL SELLKSKHEE GEAYLSEIES IGQAYEDIQT QNQQLLQQII ERDDHNTKIF MEGVKAKQAQ DTLHLEVCNL NRNLRQAKSL MDLYKDKVAQ
701: FDDKLKVWSE QIGRLSEDGR RHSVSSGNAQ RKLVDVQGEV QQLRKSMDEV QAKVGRNRLE VAGLLVELEK DRFSKRRIED DLESMSRKAS SLRVKTEASS
801: LLEKVHQEVN EYRGILKCGV CRDRQKEVVI TKCYHLFCND CIQKLLRNRQ RRCPSCGLSF GANDVKPIYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.