Factsheet for VIT_15s0021g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_00s1522g00010.t01
VIT_00s2082g00010.t01
VIT_01s0150g00170.t01
VIT_06s0004g00950.t01
VIT_12s0059g01290.t01
VIT_13s0019g04580.t01
VIT_13s0067g02440.t01
VIT_15s0021g02140.t01
VIT_18s0001g14300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44950.1	VIT_01s0150g00170.t01	AT1G01630.1	21798944
AT2G44950.1	VIT_18s0001g14300.t01	AT1G19980.1	21798944
AT2G44950.1	VIT_06s0004g00950.t01	AT1G55250.1	18849490
AT2G44950.1	VIT_00s0211g00050.t01	AT2G22640.1	21798944
AT2G44950.1	VIT_12s0059g01290.t01	AT2G32980.1	21798944
AT2G44950.1	VIT_15s0021g02140.t01	AT2G44950.1	18849490
AT2G44950.1	VIT_13s0067g02440.t01	AT3G10970.1	21798944
AT2G44950.1	VIT_13s0019g04580.t01	AT3G54826.1	21798944
AT2G44950.1	VIT_00s2082g00010.t01	AT4G22720.1	21798944
AT2G44950.1	VIT_00s1522g00010.t01	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30315	Soybean	nucleus	64.01	63.94
KRH75261	Soybean	nucleus	63.33	63.18
Solyc11g013370.1.1	Tomato	nucleus	60.93	63.16
GSMUA_Achr4P26970_001	Banana	nucleus	25.85	59.42
AT2G44950.1	Thale cress	nucleus	55.69	55.69
CDX74700	Canola	nucleus	54.67	54.48
CDY37020	Canola	nucleus	54.33	54.39
Bra040332.1-P	Field mustard	nucleus	54.44	54.38
CDY18962	Canola	nucleus	53.87	54.18
GSMUA_Achr1P01610_001	Banana	nucleus	54.21	54.03
CDY27400	Canola	nucleus	53.3	53.61
Bra004879.1-P	Field mustard	nucleus	54.44	52.88
GSMUA_Achr4P26960_001	Banana	nucleus	28.7	49.8
Os04t0550400-01	Rice	nucleus	48.63	48.3
HORVU0Hr1G018210.6	Barley	nucleus	47.95	48.22
TraesCS6B01G274100.2	Wheat	nucleus	47.61	47.72
TraesCS6A01G251200.2	Wheat	nucleus	47.49	47.6
TraesCS6D01G233000.5	Wheat	nucleus	47.49	47.6
TraesCS3A01G369300.2	Wheat	nucleus	47.04	47.47
TraesCS3B01G401200.2	Wheat	nucleus	47.04	47.47
TraesCS3D01G362300.2	Wheat	nucleus	46.92	47.36
EER88892	Sorghum	cytosol	43.96	45.36
Zm00001d014640_P035	Maize	cytosol	43.85	44.77
Zm00001d036507_P003	Maize	cytosol	42.26	42.59
VIT_06s0004g00950.t01	Wine grape	nucleus	37.59	37.54

Protein Annotations

EntrezGene:100241021	wikigene:100241021	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	ProteinID:CBI16629	ProteinID:CBI16629.3
ncoils:Coil	UniProt:D7SLV1	InterPro:E3_ubiquit_lig_Bre1	EMBL:FN594952	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006464	GO:GO:0006513
GO:GO:0006950	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009791	GO:GO:0009817	GO:GO:0009965	GO:GO:0009987
GO:GO:0010162	GO:GO:0010228	GO:GO:0010389	GO:GO:0010390	GO:GO:0016043	GO:GO:0016049
GO:GO:0016740	GO:GO:0019538	GO:GO:0033523	GO:GO:0040007	GO:GO:0042803	GO:GO:0045087
GO:GO:0051301	GO:GO:0051781	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100241021	wikigene:LOC100241021
PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00015C9A8F	ArrayExpress:VIT_15s0021g02140	EnsemblPlantsGene:VIT_15s0021g02140	EnsemblPlants:VIT_15s0021g02140.t01	RefSeq:XP_002274055
RefSeq:XP_002274055.1	RefSeq:XP_010661359.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

No Description!

Coordinates

chr15:-:12989354..13025506

Molecular Weight (calculated)

100237.0 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.635

Length

878 amino acids

Sequence
(BLAST)

001: MGSTGEPDRK RRHFSSLSPT AATAKKMPFL PVSEDKKLDT AVLQYQNQKL KQKLEAQKVE CSALENKFSQ LKETQQSYNT TLTLVNKTWR ELVDNLETCS
101: VHLKDSASAG RHVKLPSTTE DGNSCLQDAF LSRLIETGAT ESCSANDFSD RMEEDRPTSC GKTKNSLSNI VSTINDLWCL KDGLYAAVLE ALPEDGLCNK
201: KISSDLHAEV NNMRLAFGDL HLKHKSVTRD MQSHRDIDAK NKAELKRLRG ELESTVAELE ESNCKLVTLK AERDAAKGAF FPILSLGSKN VAGDKARDKQ
301: KDLHDMEATL KELLDQSSSR LLELKALYEE RIGILKQLSN LQNTLKNVKC ISSSSAYVLV TDQLEKSKAE VVHYQALFEK LQVEKDNLVW REKEVNMKND
401: FVDVFRRSSV VTDSRLSELR IEIQNQINER NLIEIKLEEA SREPGRKEII AEFKALLSSF PDNMGTMQNQ LRKYKEAASD VHSLRADVQS LSSVLERKEK
501: ELETLSTRSA DQVADIRKLQ ALIQDLEESD IQLKLILEMY RCESVDSRDV LEARDKEYKA WAHVQSLKSS LNEHSLELRV KTAIEAEALS QQRLAAAEAV
601: IVDLRQKLEA SKRDMFRLSD VLKSKHEENE AYLSEIETIG QAYDDMQTQN QHLLQQITER DDYNIKLVLE GVRSRQLQDS LLMEKQTMER GFQRATTSLG
701: FFDMKAGRIE DQLKMCSDQV QKLAEDRLQS LGTLANFQKR LLDVTRLSQQ ARESLEESQS KVDKSRVSLG ELQIELEKER FEKKRTEEEL EVVRRKASRL
801: RAQTEGSSIV DKLRQELREY RDILKCGICH ERPKEVVITK CYHLFCNPCV QRIIEARNRK CPVCSASFGP NDVKPVYI

Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)

001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI

Arabidopsis Description

HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.